RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1034994", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA1034994 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3994811 3994811 PRJNA1034994_P_NODE_8724_length_245_cov_0.895349_g8640_i0 PRJNA1034994 8724 245 0.895349 2.19360505 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 144 1.66e-39   NR PZP55307.1 349221 g8640 i0 89.3 0.918367346938776 75 8 91.8 0 2 226 319 393 PZP55307.1 MAG: carbamoyl phosphate synthase small subunit [Micavibrio aeruginosavorus] diamond 225 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
19294063 19294063 PRJNA1034994_P_NODE_6216_length_255_cov_1.692308_g6132_i0 PRJNA1034994 6216 255 1.692308 4.3153854 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 268 2.1099999999999998e-67   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g6132 i0 85.714 82.1450980392157 273 17 99 9 1 252 3251919 3251648 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 20947 268 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
23959933 23959933 PRJNA1034994_P_NODE_799_length_582_cov_2.483301_g716_i0 PRJNA1034994 799 582 2.483301 14.45281182 Bdellovibrio 958 Bacteria Bacteria 948 0   NTclustered gi|1352809571|gb|MH013351.1| 28201 g716 i0 96.678 98.5446735395189 572 16 98 3 1 570 754 184 Bdellovibrio sp. strain MPR08 16S ribosomal RNA gene, partial sequence blastn 57353 948 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28266682 28266682 PRJNA1034994_P_NODE_5746_length_260_cov_1.935829_g5662_i0 PRJNA1034994 5746 260 1.935829 5.0331554 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 104 2.14e-24   NR MCO5114005.1 2026715 g5662 i0 57.6 0.980769230769231 85 36 98.1 0 260 6 34 118 MCO5114005.1 cysteine desulfurase [Pseudobdellovibrionaceae bacterium] diamond 255 104 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
31425547 31425547 PRJNA1034994_P_NODE_5576_length_262_cov_1.629630_g5492_i0 PRJNA1034994 5576 262 1.62963 4.2696306 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 79.7 4.59e-15   NR MCO5113761.1 2026715 g5492 i0 46 0.99618320610687 87 47 99.6 0 2 262 161 247 MCO5113761.1 lytic transglycosylase domain-containing protein [Pseudobdellovibrionaceae bacterium] diamond 261 79.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32847849 32847849 PRJNA1034994_P_NODE_6400_length_253_cov_1.711111_g6316_i0 PRJNA1034994 6400 253 1.711111 4.32911083 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 66.6 1.43e-10   NR MBX3034417.1 2026715 g6316 i0 46.5 1.0197628458498 86 39 93.7 2 252 16 274 359 MBX3034417.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 258 66.6 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;