RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1034994", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 6 ✖

tax_kingdom 1

  • Pseudomonadati · 6 ✖

bioproject 1

  • PRJNA1034994 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16745200 16745200 PRJNA1034994_P_NODE_6954_length_250_cov_1.158192_g6870_i0 PRJNA1034994 6954 250 1.158192 2.89548 Acidobacteriota bacterium 1978231 Bacteria Bacteria 424 4.16e-114   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g6870 i0 97.951 170.588 244 5 98 0 7 250 3300946 3300703 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 42647 424 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
23120427 23120427 PRJNA1034994_P_NODE_4119_length_279_cov_1.495146_g4035_i0 PRJNA1034994 4119 279 1.495146 4.17145734 Luteitalea sp. 2004800 Bacteria Bacteria 55.5 1.86e-6   NR WP_291989076.1 2004800 g4035 i0 63.8 0.505376344086022 47 16 49.5 1 277 140 218 264 WP_291989076.1 DUF4129 domain-containing protein [Luteitalea sp.] diamond 141 55.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea sp.
27887904 27887904 PRJNA1034994_P_NODE_4565_length_274_cov_1.174129_g4481_i0 PRJNA1034994 4565 274 1.174129 3.21711346 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 137 3.02e-35   NR HEX3558856.1 2283092 g4481 i0 70.3 0.996350364963504 91 27 99.6 0 273 1 566 656 HEX3558856.1 LamG-like jellyroll fold domain-containing protein [Pyrinomonadaceae bacterium] diamond 273 137 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
28235084 28235084 PRJNA1034994_P_NODE_3526_length_286_cov_2.295775_g3442_i0 PRJNA1034994 3526 286 2.295775 6.5659165 Vicinamibacterales bacterium 2910147 Bacteria Bacteria 53.5 3.06e-6   NR HET9362180.1 2910147 g3442 i0 36.4 1.6993006993007 88 49 85 2 286 44 74 161 HET9362180.1 SRPBCC domain-containing protein [Vicinamibacterales bacterium] diamond 486 53.5 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales     Vicinamibacterales bacterium
28614234 28614234 PRJNA1034994_P_NODE_9667_length_242_cov_2.213018_g9583_i0 PRJNA1034994 9667 242 2.213018 5.35550356 Terriglobus sp. 1889013 Bacteria Bacteria 55.5 4.23e-7   NR MEK6398084.1 1889013 g9583 i0 78.1 0.396694214876033 32 7 39.7 0 240 145 146 177 MEK6398084.1 APC family permease [Terriglobus sp.] diamond 96 55.5 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Acidobacteriaceae Terriglobus Terriglobus sp.
30888252 30888252 PRJNA1034994_P_NODE_4534_length_274_cov_1.492537_g4450_i0 PRJNA1034994 4534 274 1.492537 4.08955138 Acidobacteriota bacterium 1978231 Bacteria Bacteria 135 2.02e-35   NR MFN8004369.1 1978231 g4450 i0 74.7 1.99270072992701 91 23 99.6 0 273 1 41 131 MFN8004369.1 carboxypeptidase regulatory-like domain-containing protein [Acidobacteriota bacterium] diamond 546 135 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;