RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1034994" and tax_kingdom = "Orthornavirae"

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analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA1034994 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3558163 3558163 PRJNA1034994_P_NODE_3703_length_284_cov_1.890995_g3619_i0 PRJNA1034994 3703 284 1.890995 5.3704258 root 1 Root_unresolved Root_unresolved 520 5.98e-143   NTclustered gi|388240233|emb|HE818437.1| 12242 g3619 i0 99.648 99.9964788732394 284 1 100 0 1 284 3116 2833 Tobacco mosaic virus isolate Mangshi-2, complete genome blastn 28399 520 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Martellivirales Virgaviridae Tobamovirus Tobamovirus tabaci
9095763 9095763 PRJNA1034994_P_NODE_2268_length_341_cov_0.951493_g2184_i0 PRJNA1034994 2268 341 0.951493 3.24459113 Totiviridae sp. 1955172 Viruses Viruses 128 5.2e-25   NTclustered gi|2396039312|gb|ON812794.1| 1955172 g2184 i0 88.571 0.30791788856305 105 12 31 0 13 117 3585 3689 MAG: Totiviridae sp. isolate TIGMIC_125, complete genome blastn 105 128 1 Viruses   Orthornavirae Duplornaviricota Chrymotiviricetes Ghabrivirales Totiviridae   Totiviridae sp.
16745202 16745202 PRJNA1034994_P_NODE_7174_length_249_cov_2.477273_g7090_i0 PRJNA1034994 7174 249 2.477273 6.16840977 Skokie dicistro-like virus 2789443 Viruses Viruses 438 1.4799999999999996e-118   NTclustered gi|1940198090|gb|MT757477.1| 2789443 g7090 i0 98.394 4.9718875502008 249 4 100 0 1 249 216 464 Skokie dicistro-like virus strain CHNdf-3 polyprotein gene, partial cds blastn 1238 438 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Skokie dicistro-like virus
27129524 27129524 PRJNA1034994_P_NODE_5602_length_262_cov_1.365079_g5518_i0 PRJNA1034994 5602 262 1.365079 3.57650698 Skokie reo-like virus 2789444 Viruses Viruses 82 7.22e-16   NR QPN36930.1 2789444 g5518 i0 47.1 0.973282442748092 85 45 97.3 0 262 8 392 476 QPN36930.1 hypothetical protein, partial [Skokie reo-like virus] diamond 255 82 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales     Skokie reo-like virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;