RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1034994", tax_kingdom = "Methanobacteriati" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1034994 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4835638 4835638 PRJNA1034994_P_NODE_7484_length_249_cov_0.875000_g7400_i0 PRJNA1034994 7484 249 0.875 2.17875 root 1 Root_unresolved Root_unresolved 455 1.47e-123   NTclustered gi|436492|gb|U00707.1|PSU00707 33866 g7400 i0 99.598 8.95582329317269 249 1 100 0 1 249 1295 1047 Pyrococcus sp. Deep Vent DNA polymerase precursor gene, complete cds blastn 2230 455 1 Archaea   Methanobacteriati Methanobacteriota Thermococci Thermococcales Thermococcaceae Pyrococcus Pyrococcus sp.
21845169 21845169 PRJNA1034994_P_NODE_9578_length_243_cov_0.905882_g9494_i0 PRJNA1034994 9578 243 0.905882 2.20129326 Methanobacterium formicicum 2162 Archaea Archaea 219 2.0399999999999998e-52   NTclustered gi|952971377|emb|LN734822.1| 2162 g9494 i0 83.058 8.90946502057613 242 39 99 2 1 241 267168 266928 Methanobacterium formicicum genome assembly isolate Mb9, chromosome : I blastn 2165 219 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;