RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1034994", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA1034994 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1442953 1442953 PRJNA1034994_P_NODE_1022_length_508_cov_4.482759_g938_i0 PRJNA1034994 1022 508 4.482759 22.77241572 uncultured Verrucomicrobiae bacterium 412056 Bacteria Bacteria 625 2.3399999999999997e-174   NTclustered gi|2874253779|emb|OY969763.1| 412056 g938 i0 88.867 195.785433070866 512 52 100 5 1 508 3833068 3833578 MAG: uncultured Verrucomicrobiae bacterium isolate MFD04967.bin.c.2 genome assembly, chromosome: 1 blastn 99459 625 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       uncultured Verrucomicrobiae bacterium
11646790 11646790 PRJNA1034994_P_NODE_1450_length_422_cov_1.128940_g1366_i0 PRJNA1034994 1450 422 1.12894 4.7641268 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 713 0   NTclustered gi|807238858|gb|CP011265.1| 1637999 g1366 i0 97.156 127.13981042654 422 12 100 0 1 422 1903300 1903721 Verrucomicrobia bacterium IMCC26134, complete genome blastn 53653 713 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
12921929 12921929 PRJNA1034994_P_NODE_1131_length_480_cov_2.385749_g1047_i0 PRJNA1034994 1131 480 2.385749 11.4515952 Termitidicoccus mucosus 1184151 Bacteria Bacteria 617 3.68e-172   NTclustered gi|2724066732|gb|CP109796.1| 1184151 g1047 i0 89.979 97.7291666666667 479 47 99 1 1 478 5637774 5638252 Termitidicoccus mucosus strain TSB47 chromosome, complete genome blastn 46910 617 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Termitidicoccus Termitidicoccus mucosus
15471095 15471095 PRJNA1034994_P_NODE_3193_length_290_cov_3.129032_g3109_i0 PRJNA1034994 3193 290 3.129032 9.0741928 uncultured Verrucomicrobiota bacterium 156588 Bacteria Bacteria 420 6.39e-113   NTclustered gi|226525317|gb|FJ872374.1| 156588 g3109 i0 92.881 56.5758620689655 295 12 100 8 1 290 4031 4321 Uncultured Verrucomicrobia bacterium clone 184 genomic sequence blastn 16407 420 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         uncultured Verrucomicrobiota bacterium
23120423 23120423 PRJNA1034994_P_NODE_3639_length_285_cov_1.452830_g3555_i0 PRJNA1034994 3639 285 1.45283 4.1405655 Luteolibacter luteus 2728835 Bacteria Bacteria 483 7.879999999999998e-132   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g3555 i0 97.193 41.0140350877193 285 8 100 0 1 285 3804634 3804918 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 11689 483 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
27319735 27319735 PRJNA1034994_P_NODE_4843_length_270_cov_2.258883_g4759_i0 PRJNA1034994 4843 270 2.258883 6.0989841 Akkermansia sp. 1872421 Bacteria Bacteria 114 4.86e-30   NR MBR3944625.1 1872421 g4759 i0 98.2 1.22222222222222 55 1 61.1 0 4 168 106 160 MBR3944625.1 hypothetical protein [Akkermansia sp.] diamond 330 114 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;