RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1032461" and tax_superkingdom = "Archaea"

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analysis 2

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA1032461 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3993537 3993537 PRJNA1032461_S_NODE_10324_length_192_cov_1.524476_g10226_i0 PRJNA1032461 10324 192 1.524476 2.92699392 Candidatus Nitrosomarinus catalinensis 1898749 Archaea Archaea 52.8 0.017   NTclustered gi|1196088602|gb|CP021324.1| 1898749 g10226 i0 100 0.145833333333333 28 0 15 0 26 53 1213515 1213542 Candidatus Nitrosomarinus catalina strain SPOT01 chromosome, complete genome blastn 28 52.8 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrosopumilales Nitrosopumilaceae Candidatus Nitrosomarinus Candidatus Nitrosomarinus catalinensis
27414647 27414647 PRJNA1032461_S_NODE_18383_length_165_cov_0.896552_g18285_i0 PRJNA1032461 18383 165 0.896552 1.4793108 Nitrososphaeraceae archaeon 2169593 Archaea Archaea 108 5.97e-27   NR HJT85980.1 2169593 g18285 i0 96.3 0.981818181818182 54 2 98.2 0 163 2 162 215 HJT85980.1 hypothetical protein [Nitrososphaeraceae archaeon] diamond 162 108 1 Archaea   Thermoproteati Nitrososphaerota Nitrososphaeria Nitrososphaerales Nitrososphaeraceae   Nitrososphaeraceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;