RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1032461", tax_phylum = "Pisuviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Pisuviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1032461 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6545164 6545164 PRJNA1032461_S_NODE_5746_length_243_cov_1.752577_g5648_i0 PRJNA1032461 5746 243 1.752577 4.25876211 Betacoronavirus pandemicum 3418604 Viruses Viruses 69.4 2.17e-7   NTclustered gi|2524352013|emb|OY072335.1| 2697049 g5648 i0 100 16.8353909465021 37 0 15 0 1 37 21693 21657 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4091 69.4 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
10370368 10370368 PRJNA1032461_S_NODE_8869_length_205_cov_1.000000_g8771_i0 PRJNA1032461 8869 205 1 2.05 Betacoronavirus pandemicum 3418604 Viruses Viruses 75 3.82e-9   NTclustered gi|2557649546|emb|OY678249.1| 2697049 g8771 i0 95.745 21.6048780487805 47 1 23 1 2 48 10434 10389 Severe acute respiratory syndrome coronavirus 2 genome assembly, complete genome: monopartite blastn 4429 75 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
15469918 15469918 PRJNA1032461_S_NODE_4273_length_277_cov_1.140351_g4175_i0 PRJNA1032461 4273 277 1.140351 3.15877227 Betacoronavirus pandemicum 3418604 Viruses Viruses 60.2 1.52e-4   NTclustered gi|2165835560|emb|OV196626.1| 2697049 g4175 i0 100 13.0974729241877 32 0 12 0 246 277 30016 30047 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 3628 60.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum
16744072 16744072 PRJNA1032461_S_NODE_9754_length_197_cov_1.054054_g9656_i0 PRJNA1032461 9754 197 1.054054 2.07648638 Betacoronavirus pandemicum 3418604 Viruses Viruses 73.1 1.31e-8   NTclustered gi|2529058804|emb|OY156071.1| 2697049 g9656 i0 100 21.3807106598985 39 0 20 0 153 191 11499 11537 Severe acute respiratory syndrome coronavirus 2 genome assembly, chromosome: 1 blastn 4212 73.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Nidovirales Coronaviridae Betacoronavirus Betacoronavirus pandemicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;