RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1032461", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1032461 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27667166 27667166 PRJNA1032461_S_NODE_8644_length_207_cov_1.316456_g8546_i0 PRJNA1032461 8644 207 1.316456 2.72506392 Helicobacter pylori 210 Bacteria Bacteria 43.5 9.9e-4   NR GAA8766134.1 210 g8546 i0 85.7 0.304347826086957 21 3 30.4 0 139 201 1 21 GAA8766134.1 hypothetical protein Kyoto147A_4290 [Helicobacter pylori] diamond 63 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30058588 30058588 PRJNA1032461_S_NODE_21011_length_162_cov_1.256637_g20913_i0 PRJNA1032461 21011 162 1.256637 2.03575194 Bacteria 2 Bacteria Bacteria 52.4 7.05e-7   NR GAA9247665.1 210 g20913 i0 79.2 4.40740740740741 53 9 96.3 2 157 2 1 52 GAA9247665.1 hypothetical protein Kyoto199A_1210 [Helicobacter pylori] diamond 714 52.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30383111 30383111 PRJNA1032461_S_NODE_11733_length_182_cov_1.556391_g11635_i0 PRJNA1032461 11733 182 1.556391 2.83263162 Helicobacter pylori 210 Bacteria Bacteria 72 9.43e-15   NR GAA8683247.1 210 g11635 i0 72.9 0.972527472527473 59 8 84.1 2 28 180 1 59 GAA8683247.1 hypothetical protein Kyoto145A_0510 [Helicobacter pylori] diamond 177 72 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;