RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1032461" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA1032461 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18859024 18859024 PRJNA1032461_S_NODE_9595_length_198_cov_1.342282_g9497_i0 PRJNA1032461 9595 198 1.342282 2.65771836 root 1 Root_unresolved Root_unresolved 366 5.4e-97   NTclustered gi|685509839|gb|KM023647.1| 851 g9497 i0 100 103.520202020202 198 0 100 0 1 198 539 736 Fusobacterium nucleatum strain FDC 364 16S ribosomal RNA gene, partial sequence blastn 20497 366 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
22683994 22683994 PRJNA1032461_S_NODE_17938_length_165_cov_1.293103_g17840_i0 PRJNA1032461 17938 165 1.293103 2.13361995 Fusobacterium 848 Bacteria Bacteria 305 9.59e-79   NTclustered gi|1370537877|gb|CP028108.1| 860 g17840 i0 100 474.539393939394 165 0 100 0 1 165 462068 461904 Fusobacterium periodonticum strain 2_1_31 chromosome, complete genome blastn 78299 305 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum
23959473 23959473 PRJNA1032461_S_NODE_19339_length_164_cov_0.904348_g19241_i0 PRJNA1032461 19339 164 0.904348 1.48313072 Fusobacterium 848 Bacteria Bacteria 303 3.42e-78   NTclustered gi|2706407748|gb|CP077116.1| 76857 g19241 i0 100 99.9756097560976 164 0 100 0 1 164 82433 82596 Fusobacterium polymorphum strain KCOM1257 chromosome, complete genome blastn 16396 303 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;