RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1032461", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1032461 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28266669 28266669 PRJNA1032461_S_NODE_15306_length_168_cov_0.873950_g15208_i0 PRJNA1032461 15306 168 0.87395 1.468236 Ignavibacteriales bacterium 2049428 Bacteria Bacteria 85.1 8.91e-18   NR RJP72724.1 2049428 g15208 i0 71.4 1 56 16 100 0 1 168 18 73 RJP72724.1 MAG: winged helix DNA-binding domain-containing protein [Ignavibacteriales bacterium] diamond 168 85.1 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales     Ignavibacteriales bacterium
31299009 31299009 PRJNA1032461_S_NODE_11615_length_183_cov_1.164179_g11517_i0 PRJNA1032461 11615 183 1.164179 2.13044757 Ignavibacterium sp. 2651167 Bacteria Bacteria 68.2 1.77e-11   NR MCL6494993.1 2651167 g11517 i0 50 2.63934426229508 56 28 91.8 0 172 5 600 655 MCL6494993.1 T9SS type A sorting domain-containing protein [Ignavibacterium sp.] diamond 483 68.2 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
32374788 32374788 PRJNA1032461_S_NODE_18979_length_164_cov_1.173913_g18881_i0 PRJNA1032461 18979 164 1.173913 1.92521732 Ignavibacteria bacterium 2053306 Bacteria Bacteria 80.5 6.27e-16   NR HMQ70409.1 2053306 g18881 i0 74.1 3.95121951219512 54 14 98.8 0 164 3 291 344 HMQ70409.1 DEAD/DEAH box helicase [Ignavibacteria bacterium] diamond 648 80.5 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;