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contig_metadata

13 rows where bioproject = "PRJNA1032461" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA1032461 · 13 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
167093 167093 PRJNA1032461_S_NODE_6321_length_233_cov_33.711957_g6223_i0 PRJNA1032461 6321 233 33.711957 78.54885981 Vermamoeba sp. 1972851 Tubulinea other_Eukaryota 420 4.96e-113   NTclustered gi|2651357782|gb|PP174298.1| 1972851 g6223 i0 100 97.9957081545064 227 0 97 0 6 232 3088 3314 Vermamoeba sp. isolate 22 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 22833 420 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba sp.
167107 167107 PRJNA1032461_S_NODE_8341_length_210_cov_1.291925_g8243_i0 PRJNA1032461 8341 210 1.291925 2.7130425 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 342 9.769999999999999e-90   NTclustered gi|909719647|gb|KT185627.1| 5778 g8243 i0 96.19 27.2952380952381 210 6 100 2 1 210 26982 26775 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 5732 342 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
167114 167114 PRJNA1032461_S_NODE_9241_length_201_cov_1.730263_g9143_i0 PRJNA1032461 9241 201 1.730263 3.47782863 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 324 3.36e-84   NTclustered gi|909719647|gb|KT185627.1| 5778 g9143 i0 95.98 108.910447761194 199 8 99 0 1 199 27643 27841 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 21891 324 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1007166 1007166 PRJNA1032461_S_NODE_201_length_912_cov_35.296640_g141_i0 PRJNA1032461 201 912 35.29664 321.9053568 Vermamoeba 1260114 Tubulinea other_Eukaryota 1496 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g141 i0 96.872 47.3826754385965 895 26 98 2 17 910 4893 5786 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 43213 1507 0.992700729927007 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
1441770 1441770 PRJNA1032461_S_NODE_12962_length_174_cov_12.680000_g12864_i0 PRJNA1032461 12962 174 12.68 22.0632 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 322 1.01e-83   NTclustered gi|300078496|gb|GU001158.1| 5778 g12864 i0 100 104.33908045977 174 0 100 0 1 174 1625 1798 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18155 322 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
5269896 5269896 PRJNA1032461_S_NODE_1585_length_416_cov_37.013624_g1487_i0 PRJNA1032461 1585 416 37.013624 153.97667584 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 736 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g1487 i0 98.558 36.8365384615385 416 6 100 0 1 416 6683 7098 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 15324 736 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6545105 6545105 PRJNA1032461_S_NODE_1606_length_414_cov_24.983562_g1508_i0 PRJNA1032461 1606 414 24.983562 103.43194668 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 710 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g1508 i0 97.585 24.2391304347826 414 10 100 0 1 414 1631 1218 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10035 710 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
6545148 6545148 PRJNA1032461_S_NODE_22486_length_150_cov_23.613861_g22388_i0 PRJNA1032461 22486 150 23.613861 35.4207915 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 272 8.609999999999998e-69   NTclustered gi|157688394|gb|DQ123623.2| 5778 g22388 i0 99.333 100.213333333333 150 1 100 0 1 150 2644 2793 Hartmannella vermiformis strain CRIB-06 18S ribosomal RNA gene, complete sequence blastn 15032 272 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7384962 7384962 PRJNA1032461_S_NODE_3986_length_285_cov_29.550847_g3888_i0 PRJNA1032461 3986 285 29.550847 84.21991395 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 488 1.6899999999999999e-133   NTclustered gi|300078496|gb|GU001158.1| 5778 g3888 i0 97.544 36.8175438596491 285 7 100 0 1 285 1224 940 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10493 488 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9094647 9094647 PRJNA1032461_S_NODE_4528_length_269_cov_41.618182_g4430_i0 PRJNA1032461 4528 269 41.618182 111.95290958 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 496 9.47e-136   NTclustered gi|909719645|gb|KT185625.1| 5778 g4430 i0 100 12.3494423791822 268 0 99 0 1 268 6055 6322 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 3322 496 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14195734 14195734 PRJNA1032461_S_NODE_7532_length_218_cov_3.071006_g7434_i0 PRJNA1032461 7532 218 3.071006 6.69479308 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 178 3.0499999999999993e-40   NTclustered gi|292559443|ref|NC_013986.1| 5778 g7434 i0 81.651 8.92201834862385 218 37 99 2 1 217 25649 25864 Hartmannella vermiformis mitochondrion, complete genome blastn 1945 178 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
19292944 19292944 PRJNA1032461_S_NODE_6976_length_225_cov_2.011364_g6878_i0 PRJNA1032461 6976 225 2.011364 4.525569 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 311 2.99e-80   NTclustered gi|909719647|gb|KT185627.1| 5778 g6878 i0 92.958 1.88 213 15 95 0 1 213 26954 27166 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 423 311 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
20568258 20568258 PRJNA1032461_S_NODE_7797_length_215_cov_8.765060_g7699_i0 PRJNA1032461 7797 215 8.76506 18.844879 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 390 3.54e-104   NTclustered gi|300078496|gb|GU001158.1| 5778 g7699 i0 99.533 98.6604651162791 214 1 99 0 1 214 3672 3885 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 21212 390 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;