RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1031674" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1031674 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3557549 3557549 PRJNA1031674_P_NODE_5883_length_354_cov_3.398577_g5672_i0 PRJNA1031674 5883 354 3.398577 12.03096258 Esquamula 1273542 SAR_Eukaryotes SAR_Eukaryotes 265 3.95e-66   NTclustered gi|220983376|dbj|AB453012.1| 552662 g5672 i0 87.879 51.2231638418079 231 20 65 7 125 354 3440 3217 Cercozoa sp. YPF501 gene for nuclear large subunit ribosomal RNA, partial sequence blastn 18133 267 0.99250936329588 Eukaryota Sar   Cercozoa         Cercozoa sp. YPF501
11210179 11210179 PRJNA1031674_P_NODE_27189_length_242_cov_1.390533_g26978_i0 PRJNA1031674 27189 242 1.390533 3.36508986 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 442 1.1099999999999995e-119   NTclustered gi|2493707699|dbj|LC764482.1| 45107 g26978 i0 99.587 99.9793388429752 242 1 100 0 1 242 349 108 Heteromita globosa LAP3-2017 gene for 18S rRNA, partial sequence blastn 24195 442 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
18018763 18018763 PRJNA1031674_P_NODE_975_length_728_cov_5.160305_g780_i0 PRJNA1031674 975 728 5.160305 37.5670204 Bodomorpha minima 188950 SAR_Eukaryotes SAR_Eukaryotes 479 2.8199999999999986e-130   NTclustered gi|238617602|gb|FJ973377.1| 188950 g780 i0 83.032 70.3379120879121 554 69 80 18 195 728 2212 1664 Bodomorpha minima strain ATCC 50339 28S ribosomal RNA gene, partial sequence blastn 51206 479 1 Eukaryota Sar   Cercozoa   Glissomonadida Viridiraptoridae Bodomorpha Bodomorpha minima

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;