RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1031674", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 10 ✖

tax_kingdom 1

  • Pseudomonadati · 10 ✖

bioproject 1

  • PRJNA1031674 · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6109913 6109913 PRJNA1031674_P_NODE_11265_length_289_cov_1.425926_g11054_i0 PRJNA1031674 11265 289 1.425926 4.12092614 Campylobacterales 213849 Bacteria Bacteria 529 1.01e-145   NTclustered gi|385731235|gb|JQ743035.1| 196 g11054 i0 99.655 140.9723183391 290 0 100 1 1 289 1383 1094 Campylobacter fetus strain campy-a11 16S ribosomal RNA gene, partial sequence blastn 40741 534 0.99063670411985 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter fetus
6109976 6109976 PRJNA1031674_P_NODE_1745_length_569_cov_1.937500_g1538_i0 PRJNA1031674 1745 569 1.9375 11.024375 root 1 Root_unresolved Root_unresolved 1051 0   NTclustered gi|1226876681|gb|CP022559.1| 197 g1538 i0 100 100 569 0 100 0 1 569 698321 698889 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 56900 1051 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
9935045 9935045 PRJNA1031674_P_NODE_5268_length_368_cov_2.088136_g5058_i0 PRJNA1031674 5268 368 2.088136 7.68434048 Aliarcobacter 2321111 Bacteria Bacteria 680 0   NTclustered gi|1231709647|emb|LT906455.1| 28197 g5058 i0 100 388.891304347826 368 0 100 0 1 368 851653 852020 Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 blastn 143112 680 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
10369998 10369998 PRJNA1031674_P_NODE_26189_length_244_cov_0.900585_g25978_i0 PRJNA1031674 26189 244 0.900585 2.1974274 Campylobacter showae 204 Bacteria Bacteria 361 3.219999999999999e-95   NTclustered gi|1483583525|emb|LT631449.1| 204 g25978 i0 94.093 12.7540983606557 237 14 97 0 8 244 1336423 1336187 Campylobacter showae strain 129_VTPPs genome assembly, chromosome: I blastn 3112 361 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
20567916 20567916 PRJNA1031674_P_NODE_25857_length_245_cov_0.866279_g25646_i0 PRJNA1031674 25857 245 0.866279 2.12238355 Campylobacter showae 204 Bacteria Bacteria 375 1.16e-99   NTclustered gi|1622747600|gb|CP012544.1| 204 g25646 i0 94.286 13.0285714285714 245 14 100 0 1 245 515447 515203 Campylobacter showae strain ATCC 51146 chromosome, complete genome blastn 3192 375 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae
26782051 26782051 PRJNA1031674_P_NODE_10261_length_294_cov_1.742081_g10050_i0 PRJNA1031674 10261 294 1.742081 5.12171814 Campylobacter coli 195 Bacteria Bacteria 197 2.8300000000000007e-59   NR WP_402370334.1 195 g10050 i0 99 0.989795918367347 97 1 99 0 293 3 278 374 WP_402370334.1 protein rep [Campylobacter coli] diamond 291 197 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
27161263 27161263 PRJNA1031674_P_NODE_23442_length_249_cov_0.875000_g23231_i0 PRJNA1031674 23442 249 0.875 2.17875 Campylobacter jejuni 197 Bacteria Bacteria 84 3.25e-19   NR WP_240371287.1 197 g23231 i0 97.4 0.457831325301205 38 1 45.8 0 115 2 1 38 WP_240371287.1 hypothetical protein, partial [Campylobacter jejuni] diamond 114 84 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
28014472 28014472 PRJNA1031674_P_NODE_17785_length_267_cov_2.134021_g17574_i0 PRJNA1031674 17785 267 2.134021 5.69783607 Campylobacter lari 201 Bacteria Bacteria 137 1.34e-39   NR MCH3719200.1 201 g17574 i0 100 0.842696629213483 75 0 84.3 0 42 266 1 75 MCH3719200.1 Ig-like domain-containing protein [Campylobacter lari] diamond 225 137 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari
28140839 28140839 PRJNA1031674_P_NODE_10725_length_291_cov_1.756881_g10514_i0 PRJNA1031674 10725 291 1.756881 5.11252371 Campylobacter lari 201 Bacteria Bacteria 60.1 1.36e-9   NR WP_240388828.1 201 g10514 i0 100 0.319587628865979 31 0 32 0 3 95 42 72 WP_240388828.1 hypothetical protein, partial [Campylobacter lari] diamond 93 60.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari
30912001 30912001 PRJNA1031674_P_NODE_18814_length_263_cov_2.205263_g18603_i0 PRJNA1031674 18814 263 2.205263 5.79984169 Pseudomonadati 3379134 Bacteria Bacteria 117 7.369999999999998e-32   NR MCH3719218.1 201 g18603 i0 100 1.36882129277567 60 0 68.4 0 262 83 45 104 MCH3719218.1 hypothetical protein [Campylobacter lari] diamond 360 117 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;