RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1031674" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1031674 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11645311 11645311 PRJNA1031674_P_NODE_23610_length_248_cov_1.760000_g23399_i0 PRJNA1031674 23610 248 1.76 4.3648 uncultured delta proteobacterium 34034 Bacteria Bacteria 180 9.859999999999999e-41   NTclustered gi|2874254016|emb|OY970341.1| 34034 g23399 i0 82.915 123.04435483871 199 34 80 0 40 238 594039 593841 MAG: uncultured delta proteobacterium isolate MFD01231.bin.c.2 genome assembly, chromosome: 1 blastn 30515 180 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
17584742 17584742 PRJNA1031674_P_NODE_26754_length_243_cov_0.905882_g26543_i0 PRJNA1031674 26754 243 0.905882 2.20129326 Bacteria 2 Bacteria Bacteria 438 1.4399999999999996e-118   NTclustered gi|117380922|gb|EF041028.1| 34034 g26543 i0 99.18 100.288065843621 244 1 100 1 1 243 827 584 Uncultured delta proteobacterium clone F16AGEub191 small subunit ribosomal RNA gene, partial sequence blastn 24370 438 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;