RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1031674", tax_clade = "Opisthokonta" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1031674 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16309238 16309238 PRJNA1031674_P_NODE_22213_length_251_cov_0.865169_g22002_i0 PRJNA1031674 22213 251 0.865169 2.17157419 Cylicocyclus 53337 Nematoda Nematoda 113 1.03e-20   NTclustered gi|2166980952|gb|MZ888509.1| 71428 g22002 i0 88.421 1.58964143426295 95 10 37 1 121 214 7216 7122 Cylicocyclus auriculatus mitochondrion, complete genome blastn 399 113 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus auriculatus
27066619 27066619 PRJNA1031674_P_NODE_24702_length_246_cov_5.578035_g24491_i0 PRJNA1031674 24702 246 5.578035 13.7219661 Pristionchus fissidentatus 1538716 Nematoda Nematoda 49.7 1.23e-4   NR GMT33030.1 1538716 g24491 i0 37.7 0.841463414634146 69 37 76.8 2 12 200 153 221 GMT33030.1 hypothetical protein PFISCL1PPCAC_24327, partial [Pristionchus fissidentatus] diamond 207 49.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fissidentatus
31868250 31868250 PRJNA1031674_P_NODE_16117_length_273_cov_1.730000_g15906_i0 PRJNA1031674 16117 273 1.73 4.7229 Pristionchus entomophagus 358040 Nematoda Nematoda 42.7 0.0491   NR GMS94646.1 358040 g15906 i0 40 0.494505494505495 45 26 48.4 1 206 75 98 142 GMS94646.1 hypothetical protein PENTCL1PPCAC_16821, partial [Pristionchus entomophagus] diamond 135 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;