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contig_metadata

23 rows where bioproject = "PRJNA1031674", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 23 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 23 ✖

bioproject 1

  • PRJNA1031674 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
166548 166548 PRJNA1031674_P_NODE_12641_length_285_cov_0.886792_g12430_i0 PRJNA1031674 12641 285 0.886792 2.5273572 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 196 1.15e-45   NTclustered gi|2874253978|emb|OY970303.1| 412054 g12430 i0 80.303 3.71578947368421 264 48 92 4 1 262 7523335 7523074 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 1059 196 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5269571 5269571 PRJNA1031674_P_NODE_21905_length_251_cov_1.719101_g21694_i0 PRJNA1031674 21905 251 1.719101 4.31494351 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 154 6.06e-33   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g21694 i0 78.295 55.8804780876494 258 42 100 13 1 251 1103161 1102911 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 14026 154 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica
7819169 7819169 PRJNA1031674_P_NODE_10187_length_295_cov_1.387387_g9976_i0 PRJNA1031674 10187 295 1.387387 4.09279165 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 363 1.1099999999999999e-95   NTclustered gi|2874253789|emb|OY969773.1| 412054 g9976 i0 88.851 23.5152542372881 296 31 100 2 1 295 421895 422189 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 6937 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
11645151 11645151 PRJNA1031674_P_NODE_13330_length_282_cov_2.349282_g13119_i0 PRJNA1031674 13330 282 2.349282 6.62497524 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 162 1.26e-49   NR HVX89611.1 2448054 g13119 i0 80.4 0.978723404255319 92 18 97.9 0 2 277 7 98 HVX89611.1 nuclear transport factor 2 family protein [Gemmatimonadales bacterium] diamond 276 162 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
14195325 14195325 PRJNA1031674_P_NODE_21912_length_251_cov_1.702247_g21701_i0 PRJNA1031674 21912 251 1.702247 4.27263997 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 414 2.52e-111   NTclustered gi|2874253789|emb|OY969773.1| 412054 g21701 i0 96.414 130.828685258964 251 9 100 0 1 251 422765 423015 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 32838 414 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
15469489 15469489 PRJNA1031674_P_NODE_18553_length_264_cov_2.151832_g18342_i0 PRJNA1031674 18553 264 2.151832 5.68083648 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 169 1.1799999999999998e-47   NR HEX5818182.1 2448054 g18342 i0 100 3.95454545454545 87 0 98.9 0 2 262 374 460 HEX5818182.1 3-deoxy-7-phosphoheptulonate synthase [Gemmatimonadales bacterium] diamond 1044 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
18018526 18018526 PRJNA1031674_P_NODE_19875_length_259_cov_1.747312_g19664_i0 PRJNA1031674 19875 259 1.747312 4.52553808 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 207 4.76e-49   NTclustered gi|2874253938|emb|OY970263.1| 412054 g19664 i0 81.679 6.44787644787645 262 36 98 9 6 259 802589 802846 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 1670 207 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
20567801 20567801 PRJNA1031674_P_NODE_18997_length_263_cov_1.268421_g18786_i0 PRJNA1031674 18997 263 1.268421 3.33594723 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 363 9.769999999999999e-96   NTclustered gi|2874253728|emb|OY969570.1| 412054 g18786 i0 91.667 454.669201520913 264 19 100 2 1 263 173507 173768 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 119578 363 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21408804 21408804 PRJNA1031674_P_NODE_15577_length_275_cov_1.698020_g15366_i0 PRJNA1031674 15577 275 1.69802 4.669555 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 184 1.7e-55   NR MFL5521146.1 2448054 g15366 i0 100 1.98545454545455 91 0 99.3 0 1 273 29 119 MFL5521146.1 L-threonylcarbamoyladenylate synthase [Gemmatimonadales bacterium] diamond 546 184 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
21843500 21843500 PRJNA1031674_P_NODE_15698_length_275_cov_1.272277_g15487_i0 PRJNA1031674 15698 275 1.272277 3.49876175 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 146 1.24e-41   NR HSR92993.1 2448054 g15487 i0 96.3 0.872727272727273 80 3 87.3 0 275 36 160 239 HSR92993.1 alpha/beta hydrolase [Gemmatimonadales bacterium] diamond 240 146 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
24392677 24392677 PRJNA1031674_P_NODE_15480_length_275_cov_2.900990_g15269_i0 PRJNA1031674 15480 275 2.90099 7.9777225 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 94.7 4.0500000000000005e-21   NR MFL5521744.1 2448054 g15269 i0 94.1 0.556363636363636 51 3 55.6 0 122 274 111 161 MFL5521744.1 F0F1 ATP synthase subunit A [Gemmatimonadales bacterium] diamond 153 94.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
24392842 24392842 PRJNA1031674_P_NODE_27080_length_242_cov_1.822485_g26869_i0 PRJNA1031674 27080 242 1.822485 4.4104137 Longimicrobium sp. 2029185 Bacteria Bacteria 157 7.78e-45   NR WP_331123660.1 2029185 g26869 i0 92.5 0.991735537190083 80 6 99.2 0 1 240 188 267 WP_331123660.1 phosphotransferase family protein [Longimicrobium sp.] diamond 240 157 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
27224584 27224584 PRJNA1031674_P_NODE_11323_length_289_cov_1.245370_g11112_i0 PRJNA1031674 11323 289 1.24537 3.5991193 Longimicrobiaceae bacterium 3047548 Bacteria Bacteria 55.5 2.03e-6   NR HET7274654.1 3047548 g11112 i0 38 0.737024221453287 71 44 73.7 0 76 288 13 83 HET7274654.1 HAMP domain-containing sensor histidine kinase [Longimicrobiaceae bacterium] diamond 213 55.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae   Longimicrobiaceae bacterium
27919494 27919494 PRJNA1031674_P_NODE_19465_length_261_cov_1.452128_g19254_i0 PRJNA1031674 19465 261 1.452128 3.79005408 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 100 2.76e-24   NR MFL5505549.1 2448054 g19254 i0 94 0.574712643678161 50 3 57.5 0 3 152 145 194 MFL5505549.1 DUF4136 domain-containing protein [Gemmatimonadales bacterium] diamond 150 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29024994 29024994 PRJNA1031674_P_NODE_25288_length_245_cov_3.197674_g25077_i0 PRJNA1031674 25288 245 3.197674 7.8343013 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 43.9 0.0141   NR MEJ2540240.1 2026742 g25077 i0 40.8 0.6 49 28 58.8 1 24 167 101 149 MEJ2540240.1 class I SAM-dependent methyltransferase [Gemmatimonadota bacterium] diamond 147 43.9 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29372027 29372027 PRJNA1031674_P_NODE_16889_length_271_cov_1.131313_g16678_i0 PRJNA1031674 16889 271 1.131313 3.06585823 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 141 1.12e-41   NR HEX3233048.1 2448054 g16678 i0 89.3 0.830258302583026 75 8 83 0 47 271 1 75 HEX3233048.1 DUF4062 domain-containing protein [Gemmatimonadales bacterium] diamond 225 141 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29403574 29403574 PRJNA1031674_P_NODE_17429_length_269_cov_1.255102_g17218_i0 PRJNA1031674 17429 269 1.255102 3.37622438 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 42.7 0.0389   NR MEO8227240.1 2026742 g17218 i0 43.3 0.669144981412639 60 32 66.9 2 69 248 116 173 MEO8227240.1 carbonic anhydrase [Gemmatimonadota bacterium] diamond 180 42.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30035214 30035214 PRJNA1031674_P_NODE_5831_length_356_cov_1.586572_g5620_i0 PRJNA1031674 5831 356 1.586572 5.64819632 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 47.4 0.00308   NR MDQ2668021.1 2026742 g5620 i0 34.5 0.926966292134832 110 64 86 3 307 2 409 518 MDQ2668021.1 IPT/TIG domain-containing protein [Gemmatimonadota bacterium] diamond 330 47.4 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30288273 30288273 PRJNA1031674_P_NODE_8852_length_309_cov_2.580508_g8641_i0 PRJNA1031674 8852 309 2.580508 7.97376972 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 68.6 3.56e-11   NR MFL5519812.1 2448054 g8641 i0 96.9 0.310679611650485 32 1 31.1 0 212 307 1 32 MFL5519812.1 hypothetical protein [Gemmatimonadales bacterium] diamond 96 68.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30793323 30793323 PRJNA1031674_P_NODE_20414_length_257_cov_1.673913_g20203_i0 PRJNA1031674 20414 257 1.673913 4.30195641 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 169 3.13e-52   NR MFL5520024.1 2448054 g20203 i0 100 1.98443579766537 85 0 99.2 0 1 255 49 133 MFL5520024.1 glycosyltransferase [Gemmatimonadales bacterium] diamond 510 169 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
30880204 30880204 PRJNA1031674_P_NODE_14334_length_279_cov_1.966019_g14123_i0 PRJNA1031674 14334 279 1.966019 5.48519301 Longimicrobium 1804994 Bacteria Bacteria 45.8 0.00455   NR MBD0319931.1 2026742 g14123 i0 65.5 0.56989247311828 29 10 31.2 0 87 1 1 29 MBD0319931.1 metallophosphoesterase [Gemmatimonadota bacterium] diamond 159 45.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31741722 31741722 PRJNA1031674_P_NODE_12617_length_285_cov_1.146226_g12406_i0 PRJNA1031674 12617 285 1.146226 3.2667441 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 134 3.38e-35   NR HUL04500.1 2448054 g12406 i0 65.3 2 95 33 100 0 1 285 61 155 HUL04500.1 PepSY-associated TM helix domain-containing protein [Gemmatimonadales bacterium] diamond 570 134 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32847818 32847818 PRJNA1031674_P_NODE_15860_length_274_cov_1.532338_g15649_i0 PRJNA1031674 15860 274 1.532338 4.19860612 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 65.5 5.31e-10   NR WP_025411073.1 861299 g15649 i0 51.3 0.875912408759124 80 38 86.5 1 240 4 265 344 WP_025411073.1 carboxypeptidase-like regulatory domain-containing protein [Gemmatirosa kalamazoonensis] diamond 240 65.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;