RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1031674" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA1031674 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1441314 1441314 PRJNA1031674_P_NODE_12682_length_284_cov_2.431280_g12471_i0 PRJNA1031674 12682 284 2.43128 6.9048352 Herpetomonas sp. CMCC-2021e 2878147 Euglenozoa other_Eukaryota 420 6.24e-113   NTclustered gi|2220784009|gb|OK644443.1| 2878147 g12471 i0 93.31 99.8591549295775 284 19 100 0 1 284 378 661 Herpetomonas sp. CMCC-2021e isolate TCC2721 glyceraldehyde-3-phosphate dehydrogenase (gGAPDH) gene, partial cds blastn 28360 420 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Herpetomonas Herpetomonas sp. CMCC-2021e
24392651 24392651 PRJNA1031674_P_NODE_14000_length_280_cov_1.942029_g13789_i0 PRJNA1031674 14000 280 1.942029 5.4376812 Kinetoplastea 5653 Euglenozoa other_Eukaryota 130 8.49e-33   NR XP_009310538.1 71804 g13789 i0 67.4 1.97142857142857 92 30 98.6 0 278 3 71 162 XP_009310538.1 kinesin [Trypanosoma grayi] diamond 552 130 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
27572222 27572222 PRJNA1031674_P_NODE_17844_length_267_cov_1.587629_g17633_i0 PRJNA1031674 17844 267 1.587629 4.23896943 Bodo saltans 75058 Euglenozoa other_Eukaryota 77 4.34e-14   NR CUG93865.1 75058 g17633 i0 40.2 0.97752808988764 87 52 97.8 0 262 2 1116 1202 CUG93865.1 membrane-associated protein, putative [Bodo saltans] diamond 261 77 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31140553 31140553 PRJNA1031674_P_NODE_8295_length_310_cov_3.696203_g8084_i0 PRJNA1031674 8295 310 3.696203 11.4582293 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 47.4 0.00189   NR XP_067187670.1 715481 g8084 i0 38.8 0.938709677419355 49 29 46.5 1 146 3 479 527 XP_067187670.1 Pleckstrin homology domain [Trypanosoma melophagium] diamond 291 47.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
31615323 31615323 PRJNA1031674_P_NODE_10676_length_291_cov_2.004587_g10465_i0 PRJNA1031674 10676 291 2.004587 5.83334817 Bodo saltans 75058 Euglenozoa other_Eukaryota 58.2 2.51e-7   NR CUG93539.1 75058 g10465 i0 32.7 1.01030927835052 98 65 100 1 291 1 72 169 CUG93539.1 copine i-like protein, putative [Bodo saltans] diamond 294 58.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
31615329 31615329 PRJNA1031674_P_NODE_20096_length_258_cov_2.200000_g19885_i0 PRJNA1031674 20096 258 2.2 5.676 Bodo saltans 75058 Euglenozoa other_Eukaryota 77.4 1.52e-14   NR CUG92293.1 75058 g19885 i0 49.4 0.895348837209302 77 35 84.9 1 221 3 8 84 CUG92293.1 Hypothetical protein, putative [Bodo saltans] diamond 231 77.4 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
32121708 32121708 PRJNA1031674_P_NODE_24938_length_246_cov_0.890173_g24727_i0 PRJNA1031674 24938 246 0.890173 2.18982558 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 98.2 1.22e-21   NR XP_044545331.1 51637 g24727 i0 64 3.07317073170732 86 25 100 4 246 1 681 764 XP_044545331.1 uncharacterized protein C9374_008691 [Naegleria lovaniensis] diamond 756 98.2 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;