RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1028258" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1028258 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27477443 27477443 PRJNA1028258_P_NODE_166983_length_227_cov_0.898734_g166420_i0 PRJNA1028258 166983 227 0.898734 2.04012618 Fibrobacter sp. UWB16 1945874 Bacteria Bacteria 42.4 0.0428   NR WP_097021175.1 1945874 g166420 i0 30.9 0.898678414096916 68 42 83.3 1 15 203 804 871 WP_097021175.1 T9SS type A sorting domain-containing protein [Fibrobacter sp. UWB16] diamond 204 42.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB16
30288232 30288232 PRJNA1028258_P_NODE_55592_length_341_cov_1.305147_g55029_i0 PRJNA1028258 55592 341 1.305147 4.45055127 Fibrobacter sp. 35828 Bacteria Bacteria 62 1.77e-8   NR WP_405343413.1 35828 g55029 i0 36.1 6.59824046920821 108 68 94.1 1 8 328 143 250 WP_405343413.1 BMP family ABC transporter substrate-binding protein [Fibrobacter sp.] diamond 2250 62 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
32366816 32366816 PRJNA1028258_P_NODE_127779_length_238_cov_1.266272_g127216_i0 PRJNA1028258 127779 238 1.266272 3.01372736 FCB group 1783270 Bacteria Bacteria 54.7 8.38e-8   NR HHX14888.1 35828 g127216 i0 58.9 2.8109243697479 56 23 70.6 0 65 232 3 58 HHX14888.1 50S ribosomal protein L35 [Fibrobacter sp.] diamond 669 54.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;