RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA1028258" and tax_phylum = "Candidatus Auribacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Auribacterota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1028258 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29087862 29087862 PRJNA1028258_P_NODE_136168_length_234_cov_0.860606_g135605_i0 PRJNA1028258 136168 234 0.860606 2.01381804 Candidatus Tritonobacter lacicola 3039765 Bacteria Bacteria 57.8 6.24e-8   NR MDP8248212.1 3039765 g135605 i0 59 0.5 39 16 50 0 3 119 148 186 MDP8248212.1 ribonuclease D [Candidatus Tritonobacter lacicola] diamond 117 57.8 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Tritonobacteria Candidatus Tritonobacterales Candidatus Tritonobacteraceae Candidatus Tritonobacter Candidatus Tritonobacter lacicola

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;