RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1028258" and tax_phylum = "Artverviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Artverviricota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1028258 · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10367689 10367689 PRJNA1028258_P_NODE_2789_length_1346_cov_2.397807_g2577_i0 PRJNA1028258 2789 1346 2.397807 32.27448222 Moloney murine leukemia virus 11801 Viruses Viruses 903 8.1699999999964e-294   NR NP_057933.2 11801 g2577 i0 99.1 4.9925705794948 448 4 99.9 0 1 1344 795 1242 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 6720 903 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
11642129 11642129 PRJNA1028258_P_NODE_133310_length_235_cov_0.855422_g132747_i0 PRJNA1028258 133310 235 0.855422 2.0102417 Avihepadnavirus anatigruidae 3426542 Viruses Viruses 418 1.8e-112   NTclustered gi|2482564023|gb|OQ183618.1| 12639 g132747 i0 98.723 100 235 3 100 0 1 235 2453 2219 Duck hepatitis B virus strain E200529, complete genome blastn 23500 418 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Blubervirales Hepadnaviridae Avihepadnavirus Avihepadnavirus anatigruidae
13757836 13757836 PRJNA1028258_P_NODE_118191_length_246_cov_1.118644_g117628_i0 PRJNA1028258 118191 246 1.118644 2.75186424 root 1 Root_unresolved Root_unresolved 449 6.74e-122   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g117628 i0 99.593 85.760162601626 246 1 100 0 1 246 1912 2157 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 21097 449 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
22682996 22682996 PRJNA1028258_P_NODE_76458_length_295_cov_0.876106_g75895_i0 PRJNA1028258 76458 295 0.876106 2.5845127 root 1 Root_unresolved Root_unresolved 540 4.79e-149   NTclustered gi|1045515|gb|U36800.1|MLU36800 11786 g75895 i0 99.661 14.4271186440678 295 1 100 0 1 295 427 721 Murine leukemia virus Mo Ampho Delta recombinant envelope polyprotein (env) mRNA, complete cds blastn 4256 540 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31765451 31765451 PRJNA1028258_P_NODE_53137_length_348_cov_2.956989_g52574_i0 PRJNA1028258 53137 348 2.956989 10.29032172 Gammaretrovirus 153135 Viruses Viruses 236 2.63e-69   NR ABU54795.1 11786 g52574 i0 99.1 10.9051724137931 115 1 99.1 0 2 346 658 772 ABU54795.1 gag-pro-pol polyprotein [Murine leukemia virus] diamond 3795 238 0.991596638655462 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;