RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1028258", tax_clade = "sulfur-oxidizing symbionts" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • sulfur-oxidizing symbionts · 2 ✖

bioproject 1

  • PRJNA1028258 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27540681 27540681 PRJNA1028258_P_NODE_129704_length_236_cov_1.700599_g129141_i0 PRJNA1028258 129704 236 1.700599 4.01341364 Solemya velum gill symbiont 2340 Bacteria Bacteria 103 1.44e-24   NR WP_078460623.1 2340 g129141 i0 60.2 4.02966101694915 83 28 99.2 1 1 234 55 137 WP_078460623.1 type I glyceraldehyde-3-phosphate dehydrogenase [Solemya velum gill symbiont] diamond 951 103 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       Solemya velum gill symbiont
29371983 29371983 PRJNA1028258_P_NODE_25669_length_502_cov_1.803695_g25109_i0 PRJNA1028258 25669 502 1.803695 9.0545489 endosymbiont of Galathealinum brachiosum 2200906 Bacteria Bacteria 57.8 1.24e-7   NR RDH80654.1 2200906 g25109 i0 46 0.298804780876494 50 27 29.9 0 96 245 42 91 RDH80654.1 MAG: hypothetical protein DIZ80_16610 [endosymbiont of Galathealinum brachiosum] diamond 150 57.8 1 Bacteria sulfur-oxidizing symbionts Pseudomonadati Pseudomonadota Gammaproteobacteria       endosymbiont of Galathealinum brachiosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;