RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA1028258" and tax_clade = "delta/epsilon subdivisions"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 12 ✖

bioproject 1

  • PRJNA1028258 · 12 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7816043 7816043 PRJNA1028258_P_NODE_130987_length_235_cov_1.698795_g130424_i0 PRJNA1028258 130987 235 1.698795 3.99216825 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 2013741 Bacteria Bacteria 111 2.56e-26   NR PKN56670.1 2013741 g130424 i0 68.5 0.931914893617021 73 23 93.2 0 15 233 924 996 PKN56670.1 MAG: hypothetical protein CVU56_14940 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] diamond 219 111 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14
12917322 12917322 PRJNA1028258_P_NODE_139871_length_233_cov_1.609756_g139308_i0 PRJNA1028258 139871 233 1.609756 3.75073148 uncultured delta proteobacterium 34034 Bacteria Bacteria 91.6 4.42e-14   NTclustered gi|2874253999|emb|OY970324.1| 34034 g139308 i0 86.585 1.43347639484979 82 11 35 0 140 221 4182588 4182507 MAG: uncultured delta proteobacterium isolate MFD05502.bin.1.132 genome assembly, chromosome: 1 blastn 334 91.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
18015071 18015071 PRJNA1028258_P_NODE_118155_length_246_cov_1.152542_g117592_i0 PRJNA1028258 118155 246 1.152542 2.83525332 Persicimonas caeni 2292766 Bacteria Bacteria 65.8 2.85e-6   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g117592 i0 100 3.61382113821138 35 0 14 0 60 94 6198702 6198668 Persicimonas caeni strain YN101 chromosome blastn 889 65.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
26869150 26869150 PRJNA1028258_P_NODE_7081_length_923_cov_2.161593_g6718_i0 PRJNA1028258 7081 923 2.161593 19.95150339 Bacteria 2 Bacteria Bacteria 57.8 3.24e-5   NR OGQ44868.1 1797879 g6718 i0 48.2 1.0433369447454 56 29 18.2 0 8 175 527 582 OGQ44868.1 MAG: hypothetical protein A3H42_02605 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_46_8] diamond 963 57.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_46_8
27414543 27414543 PRJNA1028258_P_NODE_129023_length_237_cov_1.267857_g128460_i0 PRJNA1028258 129023 237 1.267857 3.00482109 Lujinxingia vulgaris 2600176 Bacteria Bacteria 43.5 0.0129   NR WP_146972156.1 2600176 g128460 i0 35.6 0.746835443037975 59 35 74.7 1 42 218 64 119 WP_146972156.1 hypothetical protein [Lujinxingia vulgaris] diamond 177 43.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia vulgaris
27880009 27880009 PRJNA1028258_P_NODE_122265_length_242_cov_1.751445_g121702_i0 PRJNA1028258 122265 242 1.751445 4.2384969 Bacteria 2 Bacteria Bacteria 113 7.44e-28   NR OGQ20604.1 1797848 g121702 i0 71.3 1.98347107438017 80 23 99.2 0 3 242 132 211 OGQ20604.1 MAG: hypothetical protein A2138_12550 [Deltaproteobacteria bacterium RBG_16_71_12] diamond 480 113 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_16_71_12
28709007 28709007 PRJNA1028258_P_NODE_145387_length_232_cov_0.871166_g144824_i0 PRJNA1028258 145387 232 0.871166 2.02110512 SAR324 cluster bacterium 2024889 Bacteria Bacteria 57.8 1.54e-7   NR MBF0286954.1 2024889 g144824 i0 39.1 1.73275862068966 64 39 82.8 0 15 206 21 84 MBF0286954.1 ABC transporter permease [SAR324 cluster bacterium] diamond 402 57.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29426934 29426934 PRJNA1028258_P_NODE_177749_length_225_cov_0.910256_g177186_i0 PRJNA1028258 177749 225 0.910256 2.048076 Deltaproteobacteria 28221 Bacteria Bacteria 82 3.18e-16   NR WP_111332980.1 1548548 g177186 i0 54.1 4.93333333333333 74 34 98.7 0 3 224 192 265 WP_111332980.1 pyridoxal-phosphate-dependent aminotransferase family protein [Bradymonas sediminis] diamond 1110 82.8 0.990338164251208 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
29498164 29498164 PRJNA1028258_P_NODE_174590_length_225_cov_1.365385_g174027_i0 PRJNA1028258 174590 225 1.365385 3.07211625 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 60.1 2.26e-8   NR PIR26036.1 1973973 g174027 i0 38.4 0.973333333333333 73 45 97.3 0 223 5 830 902 PIR26036.1 MAG: isoleucine--tRNA ligase [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_23] diamond 219 60.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_42_23
30508980 30508980 PRJNA1028258_P_NODE_138613_length_234_cov_0.860606_g138050_i0 PRJNA1028258 138613 234 0.860606 2.01381804 Deltaproteobacteria bacterium PRO3 2575691 Bacteria Bacteria 47.4 8.05e-4   NR MDL1872576.1 2575691 g138050 i0 82.6 1.52564102564103 23 4 29.5 0 234 166 612 634 MDL1872576.1 aconitate hydratase AcnA [Deltaproteobacteria bacterium PRO3] diamond 357 47.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium PRO3
31986823 31986823 PRJNA1028258_P_NODE_146638_length_232_cov_0.871166_g146075_i0 PRJNA1028258 146638 232 0.871166 2.02110512 Bradymonadaceae 1779135 Bacteria Bacteria 76.6 8.02e-15   NR WP_204355067.1 1548548 g146075 i0 57.8 2.56034482758621 64 26 82.8 1 41 232 30 92 WP_204355067.1 CDP-alcohol phosphatidyltransferase family protein [Bradymonas sediminis] diamond 594 77 0.994805194805195 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis
32658565 32658565 PRJNA1028258_P_NODE_32820_length_443_cov_1.139037_g32258_i0 PRJNA1028258 32820 443 1.139037 5.04593391 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 1973967 Bacteria Bacteria 68.9 2.39e-10   NR PJB48295.1 1973967 g32258 i0 30.5 1.81489841986456 154 57 77.2 7 413 72 528 671 PJB48295.1 MAG: hypothetical protein CO108_02605 [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12] diamond 804 68.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;