RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1028258", tax_clade = "PVC group" and tax_phylum = "Kiritimatiellota"

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tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA1028258 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27035004 27035004 PRJNA1028258_P_NODE_115342_length_248_cov_1.340782_g114779_i0 PRJNA1028258 115342 248 1.340782 3.32513936 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 109 2.42e-28   NR MBN1673908.1 2212473 g114779 i0 62 0.955645161290323 79 30 95.6 0 10 246 12 90 MBN1673908.1 NADAR family protein [Kiritimatiellia bacterium] diamond 237 109 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28487931 28487931 PRJNA1028258_P_NODE_114887_length_248_cov_1.692737_g114324_i0 PRJNA1028258 114887 248 1.692737 4.19798776 Kiritimatiellales bacterium 2202731 Bacteria Bacteria 84.7 7.03e-18   NR MCF7844914.1 2202731 g114324 i0 51.3 1.95967741935484 80 38 96.8 1 247 8 38 116 MCF7844914.1 6-phosphogluconolactonase [Kiritimatiellales bacterium] diamond 486 84.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales     Kiritimatiellales bacterium
30066576 30066576 PRJNA1028258_P_NODE_162692_length_228_cov_0.893082_g162129_i0 PRJNA1028258 162692 228 0.893082 2.03622696 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 102 2.8000000000000003e-23   NR HMO03259.1 2212473 g162129 i0 67.6 6.75 74 24 97.4 0 224 3 46 119 HMO03259.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase [Kiritimatiellia bacterium] diamond 1539 102 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
32089764 32089764 PRJNA1028258_P_NODE_102318_length_259_cov_1.136842_g101755_i0 PRJNA1028258 102318 259 1.136842 2.94442078 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 42.4 0.0119   NR MDD4117908.1 2212473 g101755 i0 39.1 1.54054054054054 69 35 79.9 1 236 30 19 80 MDD4117908.1 hypothetical protein [Kiritimatiellia bacterium] diamond 399 42.4 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;