RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1028258", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1028258 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28866723 28866723 PRJNA1028258_P_NODE_89588_length_272_cov_1.689655_g89025_i0 PRJNA1028258 89588 272 1.689655 4.5958616 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 57 5.13e-7   NR MCU0651906.1 2035772 g89025 i0 52.2 1.00367647058824 46 22 50.7 0 133 270 429 474 MCU0651906.1 isoleucine--tRNA ligase [Candidatus Omnitrophota bacterium] diamond 273 57 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
32438098 32438098 PRJNA1028258_P_NODE_169079_length_227_cov_0.898734_g168516_i0 PRJNA1028258 169079 227 0.898734 2.04012618 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 43.5 0.0163   NR MDP1852624.1 2035772 g168516 i0 38.6 0.92511013215859 70 42 91.2 1 9 215 307 376 MDP1852624.1 sodium-translocating pyrophosphatase [Candidatus Omnitrophota bacterium] diamond 210 43.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;