RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1028258", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Bipolaricaulota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Bipolaricaulota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA1028258 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29687287 29687287 PRJNA1028258_P_NODE_106690_length_255_cov_1.489247_g106127_i0 PRJNA1028258 106690 255 1.489247 3.79757985 Candidatus Bipolaricaulota bacterium 2306012 Bacteria Bacteria 74.3 1.25e-14   NR MCX8103424.1 2306012 g106127 i0 46.1 0.894117647058824 76 40 89.4 1 26 253 4 78 MCX8103424.1 ParB N-terminal domain-containing protein [Candidatus Bipolaricaulota bacterium] diamond 228 74.3 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Bipolaricaulota bacterium
30066560 30066560 PRJNA1028258_P_NODE_134232_length_235_cov_0.855422_g133669_i0 PRJNA1028258 134232 235 0.855422 2.0102417 Candidatus Acetothermia bacterium 2053493 Bacteria Bacteria 40.8 0.0282   NR MCR4404088.1 2053493 g133669 i0 39.1 0.587234042553191 46 28 58.7 0 205 68 1 46 MCR4404088.1 hypothetical protein [Candidatus Acetothermia bacterium] diamond 138 40.8 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota         Candidatus Acetothermia bacterium
32564678 32564678 PRJNA1028258_P_NODE_139079_length_234_cov_0.860606_g138516_i0 PRJNA1028258 139079 234 0.860606 2.01381804 Candidatus Bipolaricaulaceae bacterium 3136887 Bacteria Bacteria 53.5 4.96e-6   NR MEN3009609.1 3136887 g138516 i0 80.6 2.28205128205128 31 6 39.7 0 98 6 14 44 MEN3009609.1 glycosyltransferase family 4 protein [Candidatus Bipolaricaulaceae bacterium] diamond 534 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Bipolaricaulota Candidatus Bipolaricaulia Candidatus Bipolaricaulales Candidatus Bipolaricaulaceae   Candidatus Bipolaricaulaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;