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contig_metadata

18 rows where bioproject = "PRJNA1028258", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 18 ✖

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJNA1028258 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
164477 164477 PRJNA1028258_P_NODE_27661_length_483_cov_1.874396_g27101_i0 PRJNA1028258 27661 483 1.874396 9.05333268 Arcella discoides 1078856 Tubulinea other_Eukaryota 477 6.549999999999998e-130   NTclustered gi|345452546|gb|JF694291.1| 1078856 g27101 i0 84.536 98.4120082815735 485 71 100 4 1 483 735 253 Arcella discoides isolate DL3_98 clone 5 actin gene, partial cds blastn 47533 477 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella discoides
1437858 1437858 PRJNA1028258_P_NODE_110882_length_252_cov_0.928962_g110319_i0 PRJNA1028258 110882 252 0.928962 2.34098424 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 322 1.58e-83   NTclustered gi|259595682|gb|FJ705345.1| 675832 g110319 i0 92.444 96.484126984127 225 17 89 0 28 252 392 168 Spumochlamys bryora actin gene, partial cds blastn 24314 322 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
1439639 1439639 PRJNA1028258_P_NODE_44562_length_379_cov_1.970968_g43999_i0 PRJNA1028258 44562 379 1.970968 7.46996872 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 468 3.03e-127   NTclustered gi|421976286|gb|JQ519399.1| 1078836 g43999 i0 89.153 12.8970976253298 378 37 99 4 4 379 36 411 Cryptodifflugia operculata clone JG11.5_7 14-3-3 protein gene, partial cds blastn 4888 468 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
1439900 1439900 PRJNA1028258_P_NODE_57862_length_335_cov_0.917293_g57299_i0 PRJNA1028258 57862 335 0.917293 3.07293155 Pyxidicula operculata 1078852 Tubulinea other_Eukaryota 577 4.2199999999999986e-160   NTclustered gi|345452598|gb|JF694317.1| 1078852 g57299 i0 97.904 96.8507462686567 334 6 99 1 2 335 305 637 Pyxidicula operculata clone 2 actin gene, partial cds blastn 32445 577 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida   Pyxidicula Pyxidicula operculata
1439908 1439908 PRJNA1028258_P_NODE_58602_length_333_cov_1.015152_g58039_i0 PRJNA1028258 58602 333 1.015152 3.38045616 Nebela penardiana 499102 Tubulinea other_Eukaryota 359 1.6499999999999998e-94   NTclustered gi|423292008|gb|JQ519449.1| 499102 g58039 i0 86.728 95.5285285285285 324 41 97 2 6 328 382 704 Nebela penardiana clone JG11.33_c1 actin pseudogene, partial sequence blastn 31811 359 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Hyalospheniidae Nebela Nebela penardiana
6541970 6541970 PRJNA1028258_P_NODE_153186_length_230_cov_1.322981_g152623_i0 PRJNA1028258 153186 230 1.322981 3.0428563 Copromyxa protea 931554 Tubulinea other_Eukaryota 139 1.53e-28   NTclustered gi|508737347|dbj|AB766053.1| 931554 g152623 i0 78.182 0.956521739130435 220 46 95 2 1 219 1317 1099 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 220 139 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
7818475 7818475 PRJNA1028258_P_NODE_93167_length_268_cov_1.165829_g92604_i0 PRJNA1028258 93167 268 1.165829 3.12442172 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 313 1.02e-80   NTclustered gi|423291982|gb|JQ519436.1| 5778 g92604 i0 87.687 99.8283582089552 268 33 100 0 1 268 526 259 Vermamoeba vermiformis clone JG10.95_g4 actin gene, partial cds blastn 26754 313 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9932971 9932971 PRJNA1028258_P_NODE_168988_length_227_cov_0.898734_g168425_i0 PRJNA1028258 168988 227 0.898734 2.04012618 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 298 2.35e-76   NTclustered gi|33946358|gb|AY294158.1| 239731 g168425 i0 90.308 95.1497797356828 227 22 100 0 1 227 931 705 Hartmannella cantabrigiensis actin mRNA, complete cds blastn 21599 300 0.993333333333333 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Hartmannella Hartmannella cantabrigiensis
11207889 11207889 PRJNA1028258_P_NODE_13189_length_699_cov_1.812698_g12694_i0 PRJNA1028258 13189 699 1.812698 12.67075902 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 774 0   NTclustered gi|33946352|gb|AY294155.1| 242547 g12694 i0 87.045 93.0057224606581 687 87 98 2 1 686 724 39 Glaeseria mira actin mRNA, partial cds blastn 65011 776 0.997422680412371 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Glaeseria Glaeseria mira
15467825 15467825 PRJNA1028258_P_NODE_53413_length_348_cov_0.896057_g52850_i0 PRJNA1028258 53413 348 0.896057 3.11827836 Spumochlamys bryora 675832 Tubulinea other_Eukaryota 425 1.69e-114   NTclustered gi|259595682|gb|FJ705345.1| 675832 g52850 i0 89.181 95.8563218390805 342 36 98 1 2 343 461 121 Spumochlamys bryora actin gene, partial cds blastn 33358 425 1 Eukaryota Amoebozoa   Tubulinea Corycida   Microchlamyiidae Spumochlamys Spumochlamys bryora
18017202 18017202 PRJNA1028258_P_NODE_69515_length_308_cov_1.104603_g68952_i0 PRJNA1028258 69515 308 1.104603 3.40217724 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 368 2.51e-97   NTclustered gi|345452564|gb|JF694300.1| 1078836 g68952 i0 97.235 94.5324675324675 217 6 70 0 92 308 795 579 Cryptodifflugia operculata clone 4 actin gene, partial cds blastn 29116 368 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
20131636 20131636 PRJNA1028258_P_NODE_27056_length_489_cov_1.150000_g26496_i0 PRJNA1028258 27056 489 1.15 5.6235 Flabellulidae 136457 Tubulinea other_Eukaryota 488 3.0699999999999993e-133   NTclustered gi|167859754|gb|EU273459.1| 497999 g26496 i0 84.787 99.6053169734151 493 67 100 8 1 489 785 297 Rhizamoeba sp. ATCC 50933 actin gene, partial cds blastn 48707 490 0.995918367346939 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba sp. ATCC 50933
21840942 21840942 PRJNA1028258_P_NODE_166518_length_227_cov_0.898734_g165955_i0 PRJNA1028258 166518 227 0.898734 2.04012618 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 5.339999999999998e-35   NR AFX84537.1 5775 g165955 i0 82.7 0.991189427312775 75 13 99.1 0 227 3 128 202 AFX84537.1 alpha tubulin, partial [Amoeba proteus] diamond 225 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
24389387 24389387 PRJNA1028258_P_NODE_12380_length_720_cov_2.294931_g11892_i0 PRJNA1028258 12380 720 2.294931 16.5235032 Copromyxa protea 931554 Tubulinea other_Eukaryota 516 2.12e-141   NTclustered gi|508737347|dbj|AB766053.1| 931554 g11892 i0 80.506 13.3708333333333 672 131 93 0 30 701 672 1 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 9627 516 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
26591594 26591594 PRJNA1028258_P_NODE_170621_length_226_cov_0.904459_g170058_i0 PRJNA1028258 170621 226 0.904459 2.04407734 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 45.1 0.00412   NR AAY87037.1 5778 g170058 i0 53.1 0.424778761061947 32 15 42.5 0 131 226 123 154 AAY87037.1 CmfA-like protein, partial [Vermamoeba vermiformis] diamond 96 45.1 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
29403547 29403547 PRJNA1028258_P_NODE_78949_length_290_cov_1.606335_g78386_i0 PRJNA1028258 78949 290 1.606335 4.6583715 Copromyxa protea 931554 Tubulinea other_Eukaryota 61.6 1.45e-8   NR BAN33737.1 931554 g78386 i0 100 0.310344827586207 30 0 31 0 289 200 435 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 90 61.6 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29490145 29490145 PRJNA1028258_P_NODE_137330_length_234_cov_0.860606_g136767_i0 PRJNA1028258 137330 234 0.860606 2.01381804 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 2.4e-30   NR BAN33737.1 931554 g136767 i0 70.1 2.96153846153846 77 23 98.7 0 3 233 300 376 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 693 122 0.991803278688525 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
31646727 31646727 PRJNA1028258_P_NODE_160397_length_229_cov_0.887500_g159834_i0 PRJNA1028258 160397 229 0.8875 2.032375 Chaos carolinense 160823 Tubulinea other_Eukaryota 143 1.9199999999999998e-40   NR AFX73090.1 160823 g159834 i0 90.7 0.982532751091703 75 7 98.3 0 227 3 54 128 AFX73090.1 elongation factor 2 alpha, partial [Chaos carolinense] diamond 225 143 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;