RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1025141" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1025141 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3554725 3554725 PRJNA1025141_P_NODE_6583_length_311_cov_1.941176_g6522_i0 PRJNA1025141 6583 311 1.941176 6.03705736 Trichomonas 5721 Parabasalia other_Eukaryota 147 1.02e-40   NR AAD45335.1 5722 g6522 i0 65 1.98713826366559 103 36 99.4 0 310 2 218 320 AAD45335.1 enolase 2, partial [Trichomonas vaginalis] diamond 618 147 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31298891 31298891 PRJNA1025141_P_NODE_8795_length_262_cov_0.941799_g8734_i0 PRJNA1025141 8795 262 0.941799 2.46751338 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 59.3 6.34e-8   NR XP_068351518.1 1144522 g8734 i0 36.1 0.950381679389313 83 51 95 1 261 13 29 109 XP_068351518.1 CMGC family protein kinase [Tritrichomonas foetus] diamond 249 59.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;