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contig_metadata

34 rows where bioproject = "PRJNA1025141", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 34 ✖

tax_phylum 1

  • Myxococcota · 34 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1025141 · 34 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162699 162699 PRJNA1025141_P_NODE_11481_length_245_cov_1.145349_g11420_i0 PRJNA1025141 11481 245 1.145349 2.80610505 Minicystis rosea 888845 Bacteria Bacteria 285 2.0000000000000002e-72   NTclustered gi|1127353251|gb|CP016211.1| 888845 g11420 i0 87.755 307.959183673469 245 29 99 1 1 244 768849 769093 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 75450 285 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
3554703 3554703 PRJNA1025141_P_NODE_2763_length_493_cov_0.816667_g2702_i0 PRJNA1025141 2763 493 0.816667 4.02616831 Archangium 47 Bacteria Bacteria 54.7 0.013   NTclustered gi|827418478|gb|CP011509.1| 48 g2702 i0 100 0.117647058823529 29 0 6 0 14 42 730539 730567 Archangium gephyra strain DSM 2261, complete genome blastn 58 54.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
10366098 10366098 PRJNA1025141_P_NODE_869_length_871_cov_1.607769_g822_i0 PRJNA1025141 869 871 1.607769 14.00366799 Nannocystis exedens 54 Bacteria Bacteria 132 1.73e-30   NR WP_096333957.1 54 g822 i0 35.1 0.892078071182549 259 153 86.8 6 757 2 147 397 WP_096333957.1 M4 family metallopeptidase [Nannocystis exedens] diamond 777 132 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis exedens
11641372 11641372 PRJNA1025141_P_NODE_2470_length_520_cov_2.563758_g2409_i0 PRJNA1025141 2470 520 2.563758 13.3315416 Archangium violaceum 83451 Bacteria Bacteria 56.5 0.004   NTclustered gi|2619762464|gb|CP137851.1| 83451 g2409 i0 100 0.0576923076923077 30 0 6 0 231 260 3221785 3221756 Archangium violaceum strain KYC5002 chromosome, complete genome blastn 30 56.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
26718065 26718065 PRJNA1025141_P_NODE_61_length_2263_cov_2.618265_g54_i0 PRJNA1025141 61 2263 2.618265 59.25133695 Polyangia bacterium 3058050 Bacteria Bacteria 168 6.82e-39   NR HEY3358554.1 3058050 g54 i0 31.6 0.633672116659302 478 201 61.4 17 820 2208 1474 1840 HEY3358554.1 choice-of-anchor D domain-containing protein [Polyangia bacterium] diamond 1434 168 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
27003172 27003172 PRJNA1025141_P_NODE_11182_length_246_cov_0.890173_g11121_i0 PRJNA1025141 11182 246 0.890173 2.18982558 Kofleriaceae bacterium 2212474 Bacteria Bacteria 91.3 2.6800000000000003e-21   NR NVB81040.1 2212474 g11121 i0 88.5 1.96341463414634 52 6 63.4 0 2 157 90 141 NVB81040.1 ribose 5-phosphate isomerase B [Kofleriaceae bacterium] diamond 483 91.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
27034982 27034982 PRJNA1025141_P_NODE_10562_length_248_cov_0.880000_g10501_i0 PRJNA1025141 10562 248 0.88 2.1824 Polyangiaceae bacterium 2268199 Bacteria Bacteria 133 2.38e-34   NR HWP08228.1 2268199 g10501 i0 73.8 0.967741935483871 80 21 96.8 0 240 1 432 511 HWP08228.1 glycosyltransferase family 39 protein [Polyangiaceae bacterium] diamond 240 133 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27532700 27532700 PRJNA1025141_P_NODE_11563_length_245_cov_0.895349_g11502_i0 PRJNA1025141 11563 245 0.895349 2.19360505 Bacteria 2 Bacteria Bacteria 47.4 8.85e-4   NR MFT5685080.1 2818507 g11502 i0 33.8 2.9265306122449 80 48 98 1 240 1 495 569 MFT5685080.1 hypothetical protein [Myxococcota bacterium] diamond 717 47.8 0.99163179916318 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
27572105 27572105 PRJNA1025141_P_NODE_10064_length_249_cov_1.147727_g10003_i0 PRJNA1025141 10064 249 1.147727 2.85784023 Polyangiales bacterium 3034171 Bacteria Bacteria 53.5 6.65e-6   NR MFI5297784.1 3034171 g10003 i0 52.5 0.734939759036145 61 21 63.9 3 249 91 1134 1194 MFI5297784.1 hypothetical protein [Polyangiales bacterium] diamond 183 53.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
27572112 27572112 PRJNA1025141_P_NODE_2304_length_538_cov_1.316129_g2243_i0 PRJNA1025141 2304 538 1.316129 7.08077402 Polyangiaceae bacterium 2268199 Bacteria Bacteria 49.7 0.00204   NR HQP36378.1 2268199 g2243 i0 47.5 1.31040892193309 59 25 29.6 3 538 380 10 68 HQP36378.1 hypothetical protein [Polyangiaceae bacterium] diamond 705 49.7 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
27595997 27595997 PRJNA1025141_P_NODE_984_length_832_cov_5.396574_g935_i0 PRJNA1025141 984 832 5.396574 44.89949568 Myxococcia 32015 Bacteria Bacteria 53.5 6.61e-4   NR MCB9617944.1 2024858 g935 i0 29.6 4.07451923076923 226 128 80 7 705 40 1151 1349 MCB9617944.1 hypothetical protein [Sandaracinus sp.] diamond 3390 53.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Sandaracinaceae Sandaracinus Sandaracinus sp.
28298277 28298277 PRJNA1025141_P_NODE_806_length_899_cov_2.561743_g760_i0 PRJNA1025141 806 899 2.561743 23.03006957 Polyangiales bacterium 3034171 Bacteria Bacteria 47.4 0.0437   NR MFO0652429.1 3034171 g760 i0 33.3 0.300333704115684 90 55 29 4 755 495 204 291 MFO0652429.1 hypothetical protein [Polyangiales bacterium] diamond 270 47.4 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales     Polyangiales bacterium
28393047 28393047 PRJNA1025141_P_NODE_2746_length_494_cov_1.643705_g2685_i0 PRJNA1025141 2746 494 1.643705 8.1199027 Myxococcales bacterium 2026763 Bacteria Bacteria 188 1.0099999999999995e-55   NR MSP74356.1 2026763 g2685 i0 55.8 1.97975708502024 163 70 98.4 2 494 9 149 310 MSP74356.1 malate dehydrogenase [Myxococcales bacterium] diamond 978 188 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28487914 28487914 PRJNA1025141_P_NODE_8387_length_270_cov_1.162437_g8326_i0 PRJNA1025141 8387 270 1.162437 3.1385799 Polyangiaceae bacterium 2268199 Bacteria Bacteria 43.5 0.0127   NR HEX4338296.1 2268199 g8326 i0 31.1 1 90 54 92.2 2 1 249 31 119 HEX4338296.1 hypothetical protein [Polyangiaceae bacterium] diamond 270 43.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium
28771902 28771902 PRJNA1025141_P_NODE_11847_length_244_cov_0.982456_g11786_i0 PRJNA1025141 11847 244 0.982456 2.39719264 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 51.2 3.62e-5   NR MCL5878930.1 2026735 g11786 i0 36.8 1.72131147540984 68 41 83.6 1 209 6 104 169 MCL5878930.1 saccharopine dehydrogenase NADP-binding domain-containing protein [Deltaproteobacteria bacterium] diamond 420 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28803272 28803272 PRJNA1025141_P_NODE_7968_length_278_cov_1.473171_g7907_i0 PRJNA1025141 7968 278 1.473171 4.09541538 Nannocystaceae bacterium 2545255 Bacteria Bacteria 70.5 9.59e-12   NR MEZ4381494.1 2545255 g7907 i0 47.1 0.733812949640288 68 33 72.3 2 202 2 214 279 MEZ4381494.1 hypothetical protein [Nannocystaceae bacterium] diamond 204 70.5 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae   Nannocystaceae bacterium
29214234 29214234 PRJNA1025141_P_NODE_9949_length_250_cov_0.870056_g9888_i0 PRJNA1025141 9949 250 0.870056 2.17514 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 84.3 8.29e-17   NR MBW2271860.1 2026735 g9888 i0 55.7 2.484 70 30 84 1 1 210 222 290 MBW2271860.1 glutamine synthetase [Deltaproteobacteria bacterium] diamond 621 84.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
29466201 29466201 PRJNA1025141_P_NODE_10150_length_249_cov_0.875000_g10089_i0 PRJNA1025141 10150 249 0.875 2.17875 Myxococcota bacterium 2818507 Bacteria Bacteria 63.2 2.52e-9   NR MEZ4269039.1 2818507 g10089 i0 51.8 1 83 40 100 0 249 1 275 357 MEZ4269039.1 hypothetical protein [Myxococcota bacterium] diamond 249 63.2 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29877177 29877177 PRJNA1025141_P_NODE_2831_length_487_cov_0.946860_g2770_i0 PRJNA1025141 2831 487 0.94686 4.6112082 Kofleriaceae bacterium 2212474 Bacteria Bacteria 46.6 0.00445   NR HUJ60681.1 2212474 g2770 i0 45.2 0.517453798767967 42 23 25.9 0 436 311 33 74 HUJ60681.1 hypothetical protein [Kofleriaceae bacterium] diamond 252 46.6 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
29877191 29877191 PRJNA1025141_P_NODE_9471_length_251_cov_0.865169_g9410_i0 PRJNA1025141 9471 251 0.865169 2.17157419 Myxococcota bacterium 2818507 Bacteria Bacteria 54.3 3.42e-6   NR MFT5431550.1 2818507 g9410 i0 49 0.585657370517928 49 23 56.2 1 2 142 247 295 MFT5431550.1 hypothetical protein [Myxococcota bacterium] diamond 147 54.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30414456 30414456 PRJNA1025141_P_NODE_1973_length_586_cov_1.688109_g1913_i0 PRJNA1025141 1973 586 1.688109 9.89231874 Myxococcaceae bacterium 2484252 Bacteria Bacteria 48.1 0.0111   NR MBS1149681.1 2484252 g1913 i0 27.1 0.926621160409556 181 99 92.2 8 553 14 505 653 MBS1149681.1 hypothetical protein [Myxococcaceae bacterium] diamond 543 48.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30414469 30414469 PRJNA1025141_P_NODE_8093_length_276_cov_1.137931_g8032_i0 PRJNA1025141 8093 276 1.137931 3.14068956 Myxococcota bacterium 2818507 Bacteria Bacteria 60.5 3.43e-8   NR MEW5847593.1 2818507 g8032 i0 41 0.847826086956522 78 43 84.8 2 234 1 1079 1153 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 234 60.5 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30761783 30761783 PRJNA1025141_P_NODE_1134_length_775_cov_1.511396_g1081_i0 PRJNA1025141 1134 775 1.511396 11.713319 Myxococcota bacterium 2818507 Bacteria Bacteria 101 9.24e-21   NR MFM7200887.1 2818507 g1081 i0 35.3 0.712258064516129 184 114 70.8 5 663 115 23 202 MFM7200887.1 WD40/YVTN/BNR-like repeat-containing protein [Myxococcota bacterium] diamond 552 101 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
30919878 30919878 PRJNA1025141_P_NODE_8454_length_269_cov_0.882653_g8393_i0 PRJNA1025141 8454 269 0.882653 2.37433657 Myxococcales bacterium 2026763 Bacteria Bacteria 51.2 5.42e-5   NR MBT9558510.1 2026763 g8393 i0 48.1 0.579925650557621 52 25 55.8 2 3 152 756 807 MBT9558510.1 hypothetical protein [Myxococcales bacterium] diamond 156 51.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31101223 31101223 PRJNA1025141_P_NODE_12155_length_244_cov_0.883041_g12094_i0 PRJNA1025141 12155 244 0.883041 2.15462004 Myxococcia 32015 Bacteria Bacteria 149 1.6699999999999999e-43   NR MDB4952475.1 2026763 g12094 i0 88.9 12.9344262295082 81 9 99.6 0 244 2 53 133 MDB4952475.1 hypothetical protein [Myxococcales bacterium] diamond 3156 149 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31140441 31140441 PRJNA1025141_P_NODE_12475_length_243_cov_0.905882_g12414_i0 PRJNA1025141 12475 243 0.905882 2.20129326 Myxococcales bacterium SG8_38_1 1703408 Bacteria Bacteria 43.1 0.0247   NR KPK52736.1 1703408 g12414 i0 38.6 0.864197530864197 70 38 80.2 2 241 47 34 103 KPK52736.1 MAG: hypothetical protein AMJ63_08550 [Myxococcales bacterium SG8_38_1] diamond 210 43.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium SG8_38_1
31330504 31330504 PRJNA1025141_P_NODE_6096_length_324_cov_1.745020_g6035_i0 PRJNA1025141 6096 324 1.74502 5.6538648 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.7 0.0121   NR HAC79171.1 2026735 g6035 i0 31.7 1.57407407407407 82 54 75.9 1 13 258 4 83 HAC79171.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 510 44.7 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31393988 31393988 PRJNA1025141_P_NODE_136_length_1668_cov_1.882132_g119_i0 PRJNA1025141 136 1668 1.882132 31.39396176 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 58.2 6.14e-5   NR MCB9737160.1 2026735 g119 i0 44.9 0.0881294964028777 49 27 8.8 0 1550 1404 13 61 MCB9737160.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 147 58.2 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31583810 31583810 PRJNA1025141_P_NODE_7716_length_284_cov_1.052133_g7655_i0 PRJNA1025141 7716 284 1.052133 2.98805772 Archangium sp. Cb G35 1920190 Bacteria Bacteria 82 6.37e-16   NR WP_073563487.1 1920190 g7655 i0 45.9 0.897887323943662 85 45 88.7 1 4 255 232 316 WP_073563487.1 hypothetical protein [Archangium sp. Cb G35] diamond 255 82 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium sp. Cb G35
31741618 31741618 PRJNA1025141_P_NODE_2977_length_474_cov_1.708229_g2916_i0 PRJNA1025141 2977 474 1.708229 8.09700546 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 50.8 6.25e-4   NR MBW2700697.1 2026735 g2916 i0 55.8 0.272151898734177 43 18 27.2 1 14 142 1198 1239 MBW2700697.1 putative metal-binding motif-containing protein [Deltaproteobacteria bacterium] diamond 129 50.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31963105 31963105 PRJNA1025141_P_NODE_5738_length_335_cov_1.076336_g5677_i0 PRJNA1025141 5738 335 1.076336 3.6057256 Myxococcota bacterium 2818507 Bacteria Bacteria 65.1 1.66e-9   NR MEW5847593.1 2818507 g5677 i0 37.3 0.913432835820896 102 59 91.3 3 334 29 886 982 MEW5847593.1 hypothetical protein [Myxococcota bacterium] diamond 306 65.1 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
32089757 32089757 PRJNA1025141_P_NODE_4198_length_397_cov_1.311728_g4137_i0 PRJNA1025141 4198 397 1.311728 5.20756016 Kofleriaceae bacterium 2212474 Bacteria Bacteria 45.4 0.00447   NR HET9987083.1 2212474 g4137 i0 41.2 0.385390428211587 51 28 37 1 9 155 14 64 HET9987083.1 hypothetical protein [Kofleriaceae bacterium] diamond 153 45.4 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32721847 32721847 PRJNA1025141_P_NODE_3100_length_464_cov_0.976982_g3039_i0 PRJNA1025141 3100 464 0.976982 4.53319648 Kofleriaceae bacterium 2212474 Bacteria Bacteria 52.4 2.66e-5   NR HTR55435.1 2212474 g3039 i0 53.7 0.530172413793103 41 19 26.5 0 26 148 28 68 HTR55435.1 hypothetical protein [Kofleriaceae bacterium] diamond 246 52.4 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
32879202 32879202 PRJNA1025141_P_NODE_8140_length_275_cov_1.143564_g8079_i0 PRJNA1025141 8140 275 1.143564 3.144801 Myxococcota bacterium 2818507 Bacteria Bacteria 81.3 1.45e-15   NR MCS6800092.1 2818507 g8079 i0 47.1 0.949090909090909 87 46 94.9 0 1 261 227 313 MCS6800092.1 pectin acetylesterase-family hydrolase [Myxococcota bacterium] diamond 261 81.3 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;