RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1025141" and tax_phylum = "Echinodermata"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1025141 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2713152 2713152 PRJNA1025141_P_NODE_11983_length_244_cov_0.900585_g11922_i0 PRJNA1025141 11983 244 0.900585 2.1974274 Diadema antillarum 105358 Echinodermata other_Eukaryota 185 2.0799999999999994e-42   NTclustered gi|2919559860|ref|XM_071624315.1| 105358 g11922 i0 80.579 40.827868852459 242 45 99 2 1 241 1270 1030 PREDICTED: Diadema antillarum eukaryotic peptide chain release factor subunit 1 (LOC139712498), mRNA blastn 9962 185 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
11641482 11641482 PRJNA1025141_P_NODE_9330_length_251_cov_1.297753_g9269_i0 PRJNA1025141 9330 251 1.297753 3.25736003 Diadema antillarum 105358 Echinodermata other_Eukaryota 241 4.52e-59   NTclustered gi|2919553965|ref|XM_071623235.1| 105358 g9269 i0 84.337 85.2749003984064 249 35 98 4 1 247 953 707 PREDICTED: Diadema antillarum isocitrate dehydrogenase [NADP], mitochondrial-like (LOC139711338), mRNA blastn 21404 241 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
25230379 25230379 PRJNA1025141_P_NODE_13120_length_241_cov_0.916667_g13059_i0 PRJNA1025141 13120 241 0.916667 2.20916747 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 102 1.2499999999999999e-23   NR KAJ8043112.1 206669 g13059 i0 62.5 1.91701244813278 72 26 89.6 1 7 222 171 241 KAJ8043112.1 Nucleoredoxin [Holothuria leucospilota] diamond 462 102 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
26686702 26686702 PRJNA1025141_P_NODE_9381_length_251_cov_0.865169_g9320_i0 PRJNA1025141 9381 251 0.865169 2.17157419 Patiria miniata 46514 Echinodermata other_Eukaryota 132 4.09e-36   NR XP_038051326.1 46514 g9320 i0 73.2 9.81274900398406 82 22 98 0 247 2 79 160 XP_038051326.1 60S ribosomal protein L7-like [Patiria miniata] diamond 2463 132 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
27248390 27248390 PRJNA1025141_P_NODE_5843_length_332_cov_0.996139_g5782_i0 PRJNA1025141 5843 332 0.996139 3.30718148 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 140 4.94e-36   NR XP_071487430.1 105358 g5782 i0 69.1 3.97590361445783 110 32 98.5 2 2 328 643 751 XP_071487430.1 P protein-like [Diadema antillarum] diamond 1320 140 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Diadematoida Diadematidae Diadema Diadema antillarum
30603627 30603627 PRJNA1025141_P_NODE_3933_length_410_cov_0.913947_g3872_i0 PRJNA1025141 3933 410 0.913947 3.7471827 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 63.5 1.21e-8   NR KAJ8031896.1 206669 g3872 i0 53.7 1.94634146341463 54 23 38.8 2 160 2 520 572 KAJ8031896.1 Src substrate protein p85 [Holothuria leucospilota] diamond 798 63.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota
31330505 31330505 PRJNA1025141_P_NODE_6816_length_305_cov_1.625000_g6755_i0 PRJNA1025141 6816 305 1.625 4.95625 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 164 7.249999999999999e-48   NR XP_011675730.2 7668 g6755 i0 73.3 0.99344262295082 101 27 99.3 0 303 1 112 212 XP_011675730.2 cathepsin Z [Strongylocentrotus purpuratus] diamond 303 164 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;