RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1025141", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1025141 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22680882 22680882 PRJNA1025141_P_NODE_12918_length_241_cov_1.011905_g12857_i0 PRJNA1025141 12918 241 1.011905 2.43869105 Aliarcobacter 2321111 Bacteria Bacteria 440 3.959999999999999e-119   NTclustered gi|1231709647|emb|LT906455.1| 28197 g12857 i0 99.585 383.240663900415 241 1 100 0 1 241 850123 849883 Arcobacter butzleri strain NCTC12481 genome assembly, chromosome: 1 blastn 92361 440 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter butzleri
27785510 27785510 PRJNA1025141_P_NODE_12844_length_242_cov_0.869822_g12783_i0 PRJNA1025141 12844 242 0.869822 2.10496924 root 1 Root_unresolved Root_unresolved 57.4 2.52e-7   NR WP_321229399.1 205 g12783 i0 35.4 4.37603305785124 65 42 80.6 0 195 1 350 414 WP_321229399.1 translation initiation factor IF-2, partial [Campylobacter sp.] diamond 1059 57.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp.
30659029 30659029 PRJNA1025141_P_NODE_8913_length_260_cov_0.748663_g8852_i0 PRJNA1025141 8913 260 0.748663 1.9465238 root 1 Root_unresolved Root_unresolved 49.7 1.3e-4   NR WP_341557095.1 197 g8852 i0 96.2 10.2 26 1 30 0 1 78 144 169 WP_341557095.1 RBD-like domain-containing protein, partial [Campylobacter jejuni] diamond 2652 49.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
32658489 32658489 PRJNA1025141_P_NODE_1320_length_721_cov_1.270062_g1264_i0 PRJNA1025141 1320 721 1.270062 9.15714702 Arcobacter sp. 1872629 Bacteria Bacteria 63.9 1.12e-7   NR MCB9096052.1 1872629 g1264 i0 28.4 0.64493758668516 155 91 62 6 178 624 12 152 MCB9096052.1 hypothetical protein [Arcobacter sp.] diamond 465 63.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;