RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1025141" and tax_clade = "Stenosarchaea group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA1025141 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15465598 15465598 PRJNA1025141_P_NODE_5593_length_340_cov_0.835206_g5532_i0 PRJNA1025141 5593 340 0.835206 2.8397004 Halospeciosus flavus 3032283 Archaea Archaea 56.5 0.002   NTclustered gi|2490484842|gb|CP122312.1| 3032283 g5532 i0 94.444 0.288235294117647 36 2 11 0 151 186 948304 948269 Halospeciosus flavus strain XZGYJ-43 chromosome blastn 98 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halospeciosus Halospeciosus flavus
18855790 18855790 PRJNA1025141_P_NODE_415_length_1169_cov_4.146898_g388_i0 PRJNA1025141 415 1169 4.146898 48.47723762 Methanosarcinales archaeon 2250255 Archaea Archaea 607 8.879999999999997e-216   NR RYE83110.1 2250255 g388 i0 79.5 0.962360992301112 375 77 96.2 0 2 1126 42 416 RYE83110.1 MAG: translation elongation factor EF-1 subunit alpha, partial [Methanosarcinales archaeon] diamond 1125 607 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
24388862 24388862 PRJNA1025141_P_NODE_3580_length_431_cov_1.402235_g3519_i0 PRJNA1025141 3580 431 1.402235 6.04363285 Methanosarcinales archaeon 2250255 Archaea Archaea 227 6.32e-73   NR RYE84306.1 2250255 g3519 i0 79.4 0.946635730858469 136 28 94.7 0 2 409 88 223 RYE84306.1 MAG: 50S ribosomal protein L3 [Methanosarcinales archaeon] diamond 408 227 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
27919384 27919384 PRJNA1025141_P_NODE_11085_length_246_cov_1.335260_g11024_i0 PRJNA1025141 11085 246 1.33526 3.2847396 Halorubrum sp. BV1 1498500 Archaea Archaea 43.1 0.0277   NR WP_049984514.1 1498500 g11024 i0 35.4 0.792682926829268 65 35 70.7 2 17 190 136 200 WP_049984514.1 PAS domain-containing protein [Halorubrum sp. BV1] diamond 195 43.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. BV1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;