RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1025141", tax_clade = "Sar" and tax_phylum = "Cercozoa"

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tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1025141 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3989360 3989360 PRJNA1025141_P_NODE_3384_length_444_cov_1.738544_g3323_i0 PRJNA1025141 3384 444 1.738544 7.71913536 Bigelowiella natans 227086 SAR_Eukaryotes SAR_Eukaryotes 112 9.82e-29   NR AAT09102.1 227086 g3323 i0 47.6 0.837837837837838 124 60 83.1 2 49 417 21 140 AAT09102.1 cysteine proteinase, partial [Bigelowiella natans] diamond 372 112 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Bigelowiella Bigelowiella natans
24388798 24388798 PRJNA1025141_P_NODE_1140_length_773_cov_1.944286_g1087_i0 PRJNA1025141 1140 773 1.944286 15.02933078 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 323 9.189999999999999e-108   NR MES1911029.1 1215613 g1087 i0 63.7 1.00517464424321 259 92 99.7 1 773 3 10 268 MES1911029.1 hypothetical protein [Cercozoa sp. M6MM] diamond 777 323 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM
31109096 31109096 PRJNA1025141_P_NODE_5235_length_353_cov_1.010714_g5174_i0 PRJNA1025141 5235 353 1.010714 3.56782042 Cercozoa sp. M6MM 1215613 SAR_Eukaryotes SAR_Eukaryotes 109 1.93e-27   NR MES1917190.1 1215613 g5174 i0 47.5 1.0028328611898 118 61 99.4 1 351 1 17 134 MES1917190.1 hypothetical protein [Cercozoa sp. M6MM] diamond 354 109 1 Eukaryota Sar   Cercozoa         Cercozoa sp. M6MM

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;