RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1025141", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA1025141 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26813527 26813527 PRJNA1025141_P_NODE_921_length_855_cov_1.439898_g873_i0 PRJNA1025141 921 855 1.439898 12.3111279 Methanosphaera sp. 2666342 Archaea Archaea 116 3.86e-25   NR MEE3419037.1 2666342 g873 i0 35.2 0.757894736842105 216 130 74.4 4 173 808 874 1083 MEE3419037.1 hypothetical protein [Methanosphaera sp.] diamond 648 116 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
28290327 28290327 PRJNA1025141_P_NODE_3706_length_422_cov_2.071633_g3645_i0 PRJNA1025141 3706 422 2.071633 8.74229126 root 1 Root_unresolved Root_unresolved 80.1 2.13e-14   NR MBO7518105.1 66852 g3645 i0 69.4 1.84123222748815 49 14 34.1 1 323 180 423 471 MBO7518105.1 hypothetical protein [Methanobrevibacter sp.] diamond 777 80.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;