RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1025141", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1025141 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31109089 31109089 PRJNA1025141_P_NODE_11955_length_244_cov_0.900585_g11894_i0 PRJNA1025141 11955 244 0.900585 2.1974274 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 160 1.86e-45   NR HSE51102.1 2448054 g11894 i0 96.3 1.99180327868852 81 3 99.6 0 243 1 218 298 HSE51102.1 hypothetical protein [Gemmatimonadales bacterium] diamond 486 160 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
32311556 32311556 PRJNA1025141_P_NODE_7839_length_281_cov_1.245192_g7778_i0 PRJNA1025141 7839 281 1.245192 3.49898952 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 92 2.76e-19   NR MAE72304.1 2026742 g7778 i0 54.5 0.939501779359431 88 39 94 1 264 1 26 112 MAE72304.1 sugar hydrolase [Gemmatimonadota bacterium] diamond 264 92 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;