RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1025141", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 2 ✖

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA1025141 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20130530 20130530 PRJNA1025141_P_NODE_2616_length_507_cov_1.580645_g2555_i0 PRJNA1025141 2616 507 1.580645 8.01387015 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 333 1.58e-86   NTclustered gi|167859735|gb|EU273448.1| 498005 g2555 i0 80.178 86.3570019723866 449 85 88 4 59 505 141 587 Nolandella sp. ATCC 50913 alpha-tubulin gene, partial cds blastn 43783 333 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. ATCC 50913
23115001 23115001 PRJNA1025141_P_NODE_12539_length_242_cov_1.473373_g12478_i0 PRJNA1025141 12539 242 1.473373 3.56556266 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 359 1.15e-94   NTclustered gi|421976355|gb|JQ519494.1| 5778 g12478 i0 93.388 6.89256198347107 242 16 100 0 1 242 414 173 Vermamoeba vermiformis clone JG10.150_g4 elongation factor 2 alpha gene, partial cds blastn 1668 359 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;