RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1022587" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022587 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3989250 3989250 PRJNA1022587_S_NODE_104_length_588_cov_1.467961_g102_i0 PRJNA1022587 104 588 1.467961 8.63161068 Desulfovibrio fairfieldensis 44742 Bacteria Bacteria 708 0   NTclustered gi|987453195|gb|CP014229.1| 44742 g102 i0 88.345 249.522108843537 592 65 100 4 1 588 165366 165957 Desulfovibrio fairfieldensis strain CCUG 45958 chromosome, complete genome blastn 146719 708 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio fairfieldensis
25230348 25230348 PRJNA1022587_S_NODE_1360_length_248_cov_0.874286_g1358_i0 PRJNA1022587 1360 248 0.874286 2.16822928 Desulfovibrio 872 Bacteria Bacteria 307 4.34e-79   NTclustered gi|470484020|ref|NR_076625.1| 876 g1358 i0 89.113 306.096774193548 248 25 99 2 1 247 2021 2267 Desulfovibrio desulfuricans subsp. desulfuricans strain ATCC 27774 23S ribosomal RNA gene, complete sequence blastn 75912 307 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Desulfovibrio Desulfovibrio desulfuricans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;