RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022587" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1022587 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1437443 1437443 PRJNA1022587_S_NODE_142_length_527_cov_1.458150_g140_i0 PRJNA1022587 142 527 1.45815 7.6844505 Paramuribaculum intestinale 2094151 Bacteria Bacteria 939 0   NTclustered gi|2563371724|gb|CP098825.1| 2094151 g140 i0 98.859 313.320683111954 526 6 99 0 2 527 399773 399248 Paramuribaculum intestinale strain DSM 100764 chromosome, complete genome blastn 165120 939 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Paramuribaculum Paramuribaculum intestinale
9090269 9090269 PRJNA1022587_S_NODE_328_length_396_cov_1.272446_g326_i0 PRJNA1022587 328 396 1.272446 5.03888616 Paramuribaculum intestinale 2094151 Bacteria Bacteria 721 0   NTclustered gi|2563371724|gb|CP098825.1| 2094151 g326 i0 99.495 252.909090909091 396 2 100 0 1 396 399137 398742 Paramuribaculum intestinale strain DSM 100764 chromosome, complete genome blastn 100152 721 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Paramuribaculum Paramuribaculum intestinale
11641284 11641284 PRJNA1022587_S_NODE_210_length_456_cov_1.156658_g208_i0 PRJNA1022587 210 456 1.156658 5.27436048 uncultured Muribaculum sp. 1918613 Bacteria Bacteria 527 6.029999999999998e-145   NTclustered gi|1899225145|gb|MT967617.1| 1918613 g208 i0 87.636 127.252192982456 461 47 100 10 1 456 2440 1985 Uncultured Muribaculum sp. clone asv_116_2460 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 58027 527 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Muribaculaceae Muribaculum uncultured Muribaculum sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;