RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1022392" and tax_phylum = "Hemichordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022392 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162159 162159 PRJNA1022392_P_NODE_45461_length_194_cov_3.795918_g44792_i0 PRJNA1022392 45461 194 3.795918 7.36408092 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 54.7 0.005   NTclustered gi|156627633|gb|AC206138.3| 10224 g44792 i0 100 0.149484536082474 29 0 15 0 125 153 37505 37477 Saccoglossus kowalevskii BAC CUGI_SK_BA 001A17 (Clemson University Genomics Institute SSK_Ba library (Acorn worm, Saccoglossus kowalevskii)) complete sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
27027053 27027053 PRJNA1022392_P_NODE_63362_length_173_cov_1.460317_g62693_i0 PRJNA1022392 63362 173 1.460317 2.52634841 Metazoa 33208 Hemichordata other_Eukaryota 56.6 1.82e-7   NR XP_006816472.1 10224 g62693 i0 78.8 6.41618497109827 33 7 57.2 0 100 2 272 304 XP_006816472.1 PREDICTED: uncharacterized protein LOC102809869 [Saccoglossus kowalevskii] diamond 1110 56.6 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;