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contig_metadata

10 rows where bioproject = "PRJNA1022392" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022392 · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3988988 3988988 PRJNA1022392_P_NODE_63864_length_172_cov_2.328000_g63195_i0 PRJNA1022392 63864 172 2.328 4.00416 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 111 2.35e-20   NTclustered gi|2874253938|emb|OY970263.1| 412054 g63195 i0 86.869 5.7906976744186 99 13 58 0 73 171 1606806 1606708 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 996 111 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7814703 7814703 PRJNA1022392_P_NODE_39447_length_199_cov_1.881579_g38778_i0 PRJNA1022392 39447 199 1.881579 3.74434221 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 174 3.53e-39   NTclustered gi|2874253755|emb|OY969695.1| 412054 g38778 i0 85.38 60.6934673366834 171 21 85 4 1 169 120327 120495 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 12078 174 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
28645779 28645779 PRJNA1022392_P_NODE_75107_length_161_cov_1.385965_g74438_i0 PRJNA1022392 75107 161 1.385965 2.23140365 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 83.2 6.76e-17   NR MBI2797314.1 2026742 g74438 i0 98 0.93167701863354 50 1 93.2 0 11 160 1 50 MBI2797314.1 hypothetical protein [Gemmatimonadota bacterium] diamond 150 83.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29214208 29214208 PRJNA1022392_P_NODE_42989_length_195_cov_3.222973_g42320_i0 PRJNA1022392 42989 195 3.222973 6.28479735 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 69.3 1.17e-12   NR HEU4994265.1 2026741 g42320 i0 59.6 5.13846153846154 52 21 80 0 1 156 11 62 HEU4994265.1 DUF488 domain-containing protein [Gemmatimonadaceae bacterium] diamond 1002 69.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
29940391 29940391 PRJNA1022392_P_NODE_61911_length_175_cov_1.226562_g61242_i0 PRJNA1022392 61911 175 1.226562 2.1464835 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 74.7 8.01e-14   NR HEY0241622.1 2026741 g61242 i0 61.4 0.977142857142857 57 22 97.7 0 171 1 186 242 HEY0241622.1 TonB-dependent receptor [Gemmatimonadaceae bacterium] diamond 171 74.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
30603604 30603604 PRJNA1022392_P_NODE_34153_length_206_cov_2.597484_g33484_i0 PRJNA1022392 34153 206 2.597484 5.35081704 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 59.3 3.23e-8   NR MDQ2669042.1 2026742 g33484 i0 84.4 1.26699029126214 32 5 46.6 0 205 110 433 464 MDQ2669042.1 NAD(P)/FAD-dependent oxidoreductase [Gemmatimonadota bacterium] diamond 261 59.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
30951472 30951472 PRJNA1022392_P_NODE_61734_length_175_cov_1.671875_g61065_i0 PRJNA1022392 61734 175 1.671875 2.92578125 Longimicrobiales bacterium 2910168 Bacteria Bacteria 59.7 1.56e-8   NR HSL69443.1 2910168 g61065 i0 52.6 0.977142857142857 57 27 97.7 0 172 2 208 264 HSL69443.1 polysaccharide biosynthesis C-terminal domain-containing protein [Longimicrobiales bacterium] diamond 171 59.7 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
31330491 31330491 PRJNA1022392_P_NODE_80536_length_157_cov_1.318182_g79867_i0 PRJNA1022392 80536 157 1.318182 2.06954574 Longimicrobium sp. 2029185 Bacteria Bacteria 41.6 0.0298   NR HZG44202.1 2029185 g79867 i0 51.4 0.668789808917197 35 10 66.9 1 150 46 199 226 HZG44202.1 hypothetical protein [Longimicrobium sp.] diamond 105 41.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31386074 31386074 PRJNA1022392_P_NODE_43436_length_195_cov_2.993243_g42767_i0 PRJNA1022392 43436 195 2.993243 5.83682385 Gemmatimonas 173479 Bacteria Bacteria 64.3 4.85e-10   NR MEO7520221.1 1962908 g42767 i0 48.9 8.66153846153846 94 19 100 2 195 1 135 228 MEO7520221.1 GAF domain-containing protein [Gemmatimonas sp.] diamond 1689 64.7 0.993817619783617 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
32216401 32216401 PRJNA1022392_P_NODE_74138_length_162_cov_0.886957_g73469_i0 PRJNA1022392 74138 162 0.886957 1.43687034 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 86.3 1.51e-19   NR HEX6574521.1 2026741 g73469 i0 77.8 1.98148148148148 54 12 100 0 162 1 103 156 HEX6574521.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 321 86.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;