RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022392" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022392 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2712744 2712744 PRJNA1022392_P_NODE_53783_length_185_cov_2.297101_g53114_i0 PRJNA1022392 53783 185 2.297101 4.24963685 Lytechinus pictus 7653 Echinodermata other_Eukaryota 54.7 0.004   NTclustered gi|2707437704|ref|XM_064103971.1| 7653 g53114 i0 100 0.313513513513514 29 0 16 0 2 30 4343 4315 PREDICTED: Lytechinus pictus protein Aster-B-like (LOC129266105), transcript variant X1, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
21406005 21406005 PRJNA1022392_P_NODE_61377_length_175_cov_3.265625_g60708_i0 PRJNA1022392 61377 175 3.265625 5.71484375 Opisthokonta 33154 Echinodermata other_Eukaryota 139 1.1000000000000002e-28   NTclustered gi|1944840051|ref|XR_005270250.1| 46514 g60708 i0 90.566 57.0514285714286 106 8 60 2 12 116 23 127 PREDICTED: Patiria miniata large subunit ribosomal RNA (LOC119721658), rRNA blastn 9984 139 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata
28519474 28519474 PRJNA1022392_P_NODE_79867_length_157_cov_2.936364_g79198_i0 PRJNA1022392 79867 157 2.936364 4.61009148 Holothuria leucospilota 206669 Echinodermata other_Eukaryota 59.7 1.16e-8   NR KAJ8042091.1 206669 g79198 i0 58 2.86624203821656 50 21 95.5 0 6 155 370 419 KAJ8042091.1 hypothetical protein HOLleu_13073 [Holothuria leucospilota] diamond 450 59.7 1 Eukaryota Opisthokonta Metazoa Echinodermata Holothuroidea Aspidochirotida Holothuriidae Holothuria Holothuria leucospilota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;