RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022392", tax_kingdom = "Thermotogati" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 3 ✖

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA1022392 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11640787 11640787 PRJNA1022392_P_NODE_43830_length_195_cov_2.790541_g43161_i0 PRJNA1022392 43830 195 2.790541 5.44155495 Aminithiophilus ramosus 3029084 Bacteria Bacteria 69.4 1.67e-7   NTclustered gi|2027188528|gb|CP072943.1| 3029084 g43161 i0 95.349 3.00512820512821 43 2 22 0 153 195 1413766 1413724 Aminithiophilus ramosus strain J.5.4.2-T.3.5.2 chromosome, complete genome blastn 586 69.4 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminithiophilaceae Aminithiophilus Aminithiophilus ramosus
28298243 28298243 PRJNA1022392_P_NODE_11506_length_328_cov_3.911032_g10844_i0 PRJNA1022392 11506 328 3.911032 12.82818496 Dethiosulfovibrio sp. 2944751 Bacteria Bacteria 138 7.74e-39   NR MDD4837478.1 2944751 g10844 i0 61.1 0.98780487804878 108 40 97 1 2 319 72 179 MDD4837478.1 hypothetical protein [Dethiosulfovibrio sp.] diamond 324 138 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Dethiosulfovibrionaceae Dethiosulfovibrio Dethiosulfovibrio sp.
29655591 29655591 PRJNA1022392_P_NODE_62090_length_174_cov_3.858268_g61421_i0 PRJNA1022392 62090 174 3.858268 6.71338632 Aminivibrio sp. 1872489 Bacteria Bacteria 39.3 0.0443   NR HPK07954.1 1872489 g61421 i0 54.3 0.603448275862069 35 15 60.3 1 38 142 14 47 HPK07954.1 hypothetical protein [Aminivibrio sp.] diamond 105 39.3 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;