RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1022392", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA1022392 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2279000 2279000 PRJNA1022392_P_NODE_40962_length_195_cov_5.614865_g40293_i0 PRJNA1022392 40962 195 5.614865 10.94898675 Spiroplasma 2132 Bacteria Bacteria 76.8 1e-9   NTclustered gi|1084378657|gb|CP017658.1| 1898044 g40293 i0 82.759 1.33333333333333 87 13 44 2 109 194 645222 645137 Spiroplasma sp. TU-14 chromosome, complete genome blastn 260 76.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma sp. TU-14
28456347 28456347 PRJNA1022392_P_NODE_59926_length_177_cov_2.469231_g59257_i0 PRJNA1022392 59926 177 2.469231 4.37053887 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 42.4 0.0184   NR MCK9234984.1 1898209 g59257 i0 42.9 0.830508474576271 49 26 79.7 1 141 1 1 49 MCK9234984.1 hypothetical protein [Acholeplasmataceae bacterium] diamond 147 42.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;