RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022392", tax_clade = "Opisthokonta" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1022392 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
162408 162408 PRJNA1022392_P_NODE_64241_length_172_cov_1.296000_g63572_i0 PRJNA1022392 64241 172 1.296 2.22912 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.014   NTclustered gi|690697031|emb|LN252246.1| 99802 g63572 i0 100 0.162790697674419 28 0 16 0 31 58 578 551 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0054500 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
16738891 16738891 PRJNA1022392_P_NODE_27794_length_206_cov_4.918239_g27125_i0 PRJNA1022392 27794 206 4.918239 10.13157234 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.018   NTclustered gi|687212389|emb|LN361507.1| 99802 g27125 i0 100 0.135922330097087 28 0 14 0 55 82 627 600 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_contig0129926 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
31615196 31615196 PRJNA1022392_P_NODE_37216_length_205_cov_1.436709_g36547_i0 PRJNA1022392 37216 205 1.436709 2.94525345 Schistosoma rodhaini 6188 Platyhelminthes Platyhelminthes 44.7 0.00489   NR CAH8613328.1 6188 g36547 i0 50 4.8 44 22 64.4 0 190 59 946 989 CAH8613328.1 unnamed protein product [Schistosoma rodhaini] diamond 984 44.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma rodhaini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;