RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1022392", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA1022392 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29940401 29940401 PRJNA1022392_P_NODE_81171_length_156_cov_3.807339_g80502_i0 PRJNA1022392 81171 156 3.807339 5.93944884 Fibrobacterota bacterium 2052160 Bacteria Bacteria 60.5 6.47e-9   NR MBK9576254.1 2052160 g80502 i0 58.3 1.90384615384615 48 20 92.3 0 13 156 367 414 MBK9576254.1 fused MFS/spermidine synthase [Fibrobacterota bacterium] diamond 297 60.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
30943536 30943536 PRJNA1022392_P_NODE_74014_length_162_cov_0.886957_g73345_i0 PRJNA1022392 74014 162 0.886957 1.43687034 root 1 Root_unresolved Root_unresolved 41.2 0.0432   NR WP_367186221.1 261512 g73345 i0 76.2 0.759259259259259 21 5 38.9 0 5 67 255 275 WP_367186221.1 BspA family leucine-rich repeat surface protein [uncultured Fibrobacter sp.] diamond 123 41.6 0.990384615384615 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter uncultured Fibrobacter sp.
32438032 32438032 PRJNA1022392_P_NODE_41939_length_195_cov_3.986486_g41270_i0 PRJNA1022392 41939 195 3.986486 7.7736477 Fibrobacteraceae bacterium 2652288 Bacteria Bacteria 61.6 4.21e-9   NR HSQ42788.1 2652288 g41270 i0 87.9 0.507692307692308 33 4 50.8 0 2 100 24 56 HSQ42788.1 DNA repair protein RecN [Fibrobacteraceae bacterium] diamond 99 61.6 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae   Fibrobacteraceae bacterium
32847696 32847696 PRJNA1022392_P_NODE_59940_length_177_cov_2.446154_g59271_i0 PRJNA1022392 59940 177 2.446154 4.32969258 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 44.7 0.0032   NR HEX3019716.1 2813024 g59271 i0 45.7 1.69491525423729 46 21 78 1 175 38 597 638 HEX3019716.1 AMP-binding protein [Chitinispirillaceae bacterium] diamond 300 44.7 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;