RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA1022392" and tax_clade = "Amoebozoa"

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tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA1022392 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1003776 1003776 PRJNA1022392_P_NODE_25301_length_208_cov_4.279503_g24632_i0 PRJNA1022392 25301 208 4.279503 8.90136624 Dictyostelium 5782 Evosea other_Eukaryota 183 6.19e-42   NTclustered gi|85062628|gb|DQ340386.1| 5786 g24632 i0 85.635 43.1730769230769 181 18 86 8 28 206 8671 8845 Dictyostelium purpureum 17S ribosomal RNA, 5.8S ribosomal RNA, 26S ribosomal RNA, and 5S ribosomal RNA genes, complete sequence blastn 8980 183 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
3988853 3988853 PRJNA1022392_P_NODE_52664_length_186_cov_4.431655_g51995_i0 PRJNA1022392 52664 186 4.431655 8.2428783 Heterostelium pallidum 13642 Evosea other_Eukaryota 54.7 0.004   NTclustered gi|160688721|gb|EU275726.1| 13642 g51995 i0 100 0.155913978494624 29 0 16 0 101 129 18778 18750 Polysphondylium pallidum strain PN500 mitochondrion, complete genome blastn 29 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium pallidum
10365120 10365120 PRJNA1022392_P_NODE_24689_length_211_cov_2.780488_g24020_i0 PRJNA1022392 24689 211 2.780488 5.86682968 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 178 2.93e-40   NTclustered gi|300078498|gb|GU001160.1| 5755 g24020 i0 89.437 17.3364928909953 142 14 67 1 71 211 6888 6747 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3658 178 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
18014131 18014131 PRJNA1022392_P_NODE_51495_length_188_cov_2.546099_g50826_i0 PRJNA1022392 51495 188 2.546099 4.78666612 Protacanthamoeba sp. PM5 1215676 Discosea other_Eukaryota 143 9.289999999999999e-30   NTclustered gi|399764199|gb|JQ271710.1| 1215676 g50826 i0 95.556 5.28723404255319 90 3 47 1 1 89 527 438 Protacanthamoeba sp. PM5 18S ribosomal RNA gene, partial sequence blastn 994 143 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba sp. PM5
32532959 32532959 PRJNA1022392_P_NODE_65799_length_170_cov_1.349593_g65130_i0 PRJNA1022392 65799 170 1.349593 2.2943081 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 61.2 4.13e-9   NR XP_004339384.1 1257118 g65130 i0 68.6 0.617647058823529 35 11 61.8 0 141 37 46 80 XP_004339384.1 glycosyl hydrolase family 47 protein [Acanthamoeba castellanii str. Neff] diamond 105 61.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;