RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1022139", tax_phylum = "Thermoplasmatota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 4 ✖

tax_phylum 1

  • Thermoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1022139 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27351292 27351292 PRJNA1022139_P_NODE_28943_length_271_cov_1.106061_g28838_i0 PRJNA1022139 28943 271 1.106061 2.99742531 Thermoplasmata archaeon 1906666 Archaea Archaea 63.5 2.31e-9   NR NNN18203.1 1906666 g28838 i0 47.7 1.94833948339483 88 36 97.4 2 269 6 345 422 NNN18203.1 hypothetical protein [Thermoplasmata archaeon] diamond 528 63.5 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28645705 28645705 PRJNA1022139_P_NODE_21307_length_303_cov_2.352174_g21202_i0 PRJNA1022139 21307 303 2.352174 7.12708722 Thermoplasmatota archaeon 2806419 Archaea Archaea 94.7 2.48e-20   NR MCL4307926.1 2806419 g21202 i0 47.1 5.12871287128713 104 51 99 1 302 3 131 234 MCL4307926.1 translation elongation factor EF-1 subunit alpha [Thermoplasmatota archaeon] diamond 1554 94.7 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
29276915 29276915 PRJNA1022139_P_NODE_37449_length_248_cov_0.880000_g37344_i0 PRJNA1022139 37449 248 0.88 2.1824 Thermoplasmatota archaeon 2806419 Archaea Archaea 43.1 0.0288   NR MFA5860599.1 2806419 g37344 i0 35.7 0.846774193548387 70 44 83.5 1 17 223 336 405 MFA5860599.1 phospholipase D-like domain-containing protein [Thermoplasmatota archaeon] diamond 210 43.1 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
31046343 31046343 PRJNA1022139_P_NODE_7655_length_475_cov_1.507463_g7550_i0 PRJNA1022139 7655 475 1.507463 7.16044925 Thermoplasmatales archaeon 2268204 Archaea Archaea 122 6.36e-32   NR HEC72073.1 2268204 g7550 i0 42.6 0.890526315789474 141 79 89.1 1 44 466 1 139 HEC72073.1 hypothetical protein [Thermoplasmatales archaeon] diamond 423 122 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Thermoplasmatales     Thermoplasmatales archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;