RNAquarium Metadata Server
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contig_metadata

13 rows where bioproject = "PRJNA1022139" and tax_phylum = "Parabasalia"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 13 ✖

tax_clade 1

bioproject 1

  • PRJNA1022139 · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20562973 20562973 PRJNA1022139_P_NODE_9117_length_439_cov_1.592896_g9012_i0 PRJNA1022139 9117 439 1.592896 6.99281344 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 62.1 7.05e-5   NTclustered gi|154422517|ref|XM_001584221.1| 412133 g9012 i0 92.857 0.0956719817767654 42 3 10 0 175 216 621 662 Trichomonas vaginalis G3 alpha-amylase family (TVAGG3_0392240), partial mRNA blastn 42 62.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
26686637 26686637 PRJNA1022139_P_NODE_36961_length_248_cov_0.880000_g36856_i0 PRJNA1022139 36961 248 0.88 2.1824 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 48.9 2.66e-4   NR XP_068369182.1 1144522 g36856 i0 41.9 7.4758064516129 74 33 89.5 3 227 6 327 390 XP_068369182.1 uncharacterized protein TRFO_13540 [Tritrichomonas foetus] diamond 1854 48.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26781846 26781846 PRJNA1022139_P_NODE_23401_length_290_cov_2.073733_g23296_i0 PRJNA1022139 23401 290 2.073733 6.0138257 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 47.8 0.0011   NR XP_001579564.1 412133 g23296 i0 60 0.362068965517241 35 14 36.2 0 37 141 184 218 XP_001579564.1 antigen BSP-related family [Trichomonas vaginalis G3] diamond 105 47.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27090410 27090410 PRJNA1022139_P_NODE_862_length_1232_cov_11.415013_g810_i0 PRJNA1022139 862 1232 11.415013 140.63296016 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 92.4 1.06e-16   NR XP_001326373.1 412133 g810 i0 29.2 1.50487012987013 185 101 38.2 3 151 621 50 232 XP_001326373.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 1854 92.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27161088 27161088 PRJNA1022139_P_NODE_35602_length_250_cov_0.870056_g35497_i0 PRJNA1022139 35602 250 0.870056 2.17514 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 62.8 3.4e-9   NR XP_001579564.1 412133 g35497 i0 42.6 1.86 68 37 80.4 2 248 48 155 221 XP_001579564.1 antigen BSP-related family [Trichomonas vaginalis G3] diamond 465 62.8 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27540601 27540601 PRJNA1022139_P_NODE_40224_length_244_cov_0.900585_g40119_i0 PRJNA1022139 40224 244 0.900585 2.1974274 Tritrichomonas musculus 1915356 Parabasalia other_Eukaryota 53.5 5.78e-6   NR KAK8835078.1 1915356 g40119 i0 45.5 0.811475409836066 66 22 63.9 1 241 86 38 103 KAK8835078.1 hypothetical protein M9Y10_018117 [Tritrichomonas musculus] diamond 198 53.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas musculus
27698714 27698714 PRJNA1022139_P_NODE_23344_length_291_cov_0.949541_g23239_i0 PRJNA1022139 23344 291 0.949541 2.76316431 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 52.4 2.76e-5   NR XP_068363747.1 1144522 g23239 i0 42.9 0.865979381443299 84 45 83.5 1 290 48 408 491 XP_068363747.1 uncharacterized protein TRFO_20016 [Tritrichomonas foetus] diamond 252 52.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27761830 27761830 PRJNA1022139_P_NODE_944_length_1187_cov_19.913824_g889_i0 PRJNA1022139 944 1187 19.913824 236.37709088 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 99.4 4.76e-19   NR XP_067773487.1 135588 g889 i0 33.1 2.27716933445661 254 125 55.3 9 1062 406 32 275 XP_067773487.1 CAMK family protein kinase [Histomonas meleagridis] diamond 2703 99.4 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28803194 28803194 PRJNA1022139_P_NODE_22308_length_297_cov_1.383929_g22203_i0 PRJNA1022139 22308 297 1.383929 4.11026913 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 97.1 5.490000000000001e-21   NR XP_068363021.1 1144522 g22203 i0 61.8 2.3030303030303 76 29 76.8 0 1 228 466 541 XP_068363021.1 Copine family protein [Tritrichomonas foetus] diamond 684 97.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
29276875 29276875 PRJNA1022139_P_NODE_15969_length_344_cov_2.206642_g15864_i0 PRJNA1022139 15969 344 2.206642 7.59084848 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 64.7 2.47e-9   NR XP_068363747.1 1144522 g15864 i0 39.2 0.688953488372093 79 46 67.2 1 235 5 411 489 XP_068363747.1 uncharacterized protein TRFO_20016 [Tritrichomonas foetus] diamond 237 64.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30414407 30414407 PRJNA1022139_P_NODE_39993_length_244_cov_1.801170_g39888_i0 PRJNA1022139 39993 244 1.80117 4.3948548 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.1 0.00558   NR XP_001327395.1 412133 g39888 i0 47.6 2.42213114754098 42 22 51.6 0 243 118 87 128 XP_001327395.1 ribonuclease inhibitor domain-containing protein [Trichomonas vaginalis G3] diamond 591 45.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31235451 31235451 PRJNA1022139_P_NODE_29415_length_269_cov_1.392857_g29310_i0 PRJNA1022139 29415 269 1.392857 3.74678533 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 45.1 0.00783   NR XP_001579236.1 412133 g29310 i0 47.9 0.535315985130111 48 25 53.5 0 266 123 434 481 XP_001579236.1 uncharacterized protein TVAGG3_0059930 [Trichomonas vaginalis G3] diamond 144 45.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31512644 31512644 PRJNA1022139_P_NODE_41516_length_243_cov_0.882353_g41411_i0 PRJNA1022139 41516 243 0.882353 2.14411779 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 8.839999999999999e-23   NR XP_067770752.1 135588 g41411 i0 58 3.97530864197531 81 34 100 0 243 1 376 456 XP_067770752.1 EF-hand domain-containing protein 1 [Histomonas meleagridis] diamond 966 101 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;