RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1022139" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28898031 28898031 PRJNA1022139_P_NODE_21708_length_301_cov_1.350877_g21603_i0 PRJNA1022139 21708 301 1.350877 4.06613977 Fibrobacterota bacterium 2052160 Bacteria Bacteria 70.5 3.91e-12   NR HAO99831.1 2052160 g21603 i0 41.9 3.56810631229236 93 51 92.7 1 281 3 10 99 HAO99831.1 biotin--[acetyl-CoA-carboxylase] ligase [Fibrobacterota bacterium] diamond 1074 70.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
29877095 29877095 PRJNA1022139_P_NODE_21511_length_302_cov_1.628821_g21406_i0 PRJNA1022139 21511 302 1.628821 4.91903942 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 53.5 1.13e-5   NR MFP4417151.1 2813024 g21406 i0 54.8 0.417218543046358 42 17 41.7 1 134 9 24 63 MFP4417151.1 T9SS type A sorting domain-containing protein [Chitinispirillaceae bacterium] diamond 126 53.5 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
32627156 32627156 PRJNA1022139_P_NODE_2640_length_762_cov_2.641509_g2550_i0 PRJNA1022139 2640 762 2.641509 20.12829858 Chitinivibrionales bacterium 2663014 Bacteria Bacteria 247 5.7e-78   NR MBD3419113.1 2663014 g2550 i0 47.5 2.01968503937008 255 132 99.6 1 2 760 11 265 MBD3419113.1 phospholipase [Chitinivibrionales bacterium] diamond 1539 247 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinivibrionia Chitinivibrionales     Chitinivibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;