RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1022139" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1022139 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21838401 21838401 PRJNA1022139_P_NODE_17358_length_332_cov_1.648649_g17253_i0 PRJNA1022139 17358 332 1.648649 5.47351468 Prosthecochloris sp. 290513 Bacteria Bacteria 185 4.95e-52   NR WP_294343493.1 290513 g17253 i0 77.1 8.8644578313253 109 25 98.5 0 3 329 567 675 WP_294343493.1 phosphoketolase [Prosthecochloris sp.] diamond 2943 185 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp.
31702208 31702208 PRJNA1022139_P_NODE_40137_length_244_cov_1.239766_g40032_i0 PRJNA1022139 40137 244 1.239766 3.02502904 Pseudomonadati 3379134 Bacteria Bacteria 42.7 0.0378   NR KZK75194.1 1100 g40032 i0 47.7 1.14344262295082 44 23 54.1 0 67 198 433 476 KZK75194.1 MAG: UDP-N-acetylenolpyruvoylglucosamine reductase [Pelodictyon luteolum] diamond 279 42.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;