RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1022139" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 1 ✖

bioproject 1

  • PRJNA1022139 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30351457 30351457 PRJNA1022139_P_NODE_30012_length_267_cov_1.190722_g29907_i0 PRJNA1022139 30012 267 1.190722 3.17922774 Fusobacterium necrophorum 859 Bacteria Bacteria 46.6 0.00205   NR WP_285050873.1 859 g29907 i0 37.7 0.865168539325843 77 46 84.3 2 248 24 99 175 WP_285050873.1 DUF4116 domain-containing protein [Fusobacterium necrophorum] diamond 231 46.6 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium necrophorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;